Section I– Microbiology By Nada Sajet
Wound infections and rare cause of
septicemia
P.damsela
V. fluvialis Gastroenteritis
V. furnissii Rarely associated with human infections
Grimontia hollisa Gastroenteritis; rare cause of septicemia
Rare cause of septicemia; involvement in
gastroenteritis
is uncertain
V. metschnikovii
V. mimicus Gastroenteritis; rare cause of ear infection
Wound infections and septicemia;
involvement in
gastroenteritis is uncertain
V. vulnificus
Gastroenteritis, wound infections,
bacteremia, and
miscellaneous other infections, including
endocarditis,
meningitis, pneumonia, conjunctivitis, and
osteomyelitis
Aeromonas spp. produce various toxins and
factors, but their specific role in virulence is
uncertain
Aeromonas spp.
Rare but dangerous infection. Begins with
cellulitis or
lymphadenitis and can rapidly progress to
systemic
infection with abscess formation in various
organs and
septic shock
Endotoxin, adhesins, invasins and cytolytic
proteins have been described.
Chromobacterium
violaceum
C. violaceum is not associated with gastrointestinal infections, but acquisition of this organism by
contamination of wounds can lead to fulminant, life-threatening systemic infections.
Laboratory diagnosis
Specimen collection and transport
Because no special considerations are required for isolation of these genera. However, stool specimens
suspected of containing Vibrio spp. should be collected and transported only in Cary-Blair medium.
Buffered glycerol saline is not acceptable, because glycerol is toxic for vibrios. Feces is preferable, but rectal
swabs are acceptable during the acute phase of diarrheal illness.
Specimen processing
No special considerations are required for processing of the organisms .
Direct detection methods
99
Arranged by Sarah Mohssen
Section I– Microbiology By Nada Sajet
V. cholerae toxin can be detected in stool using an enzyme linked immunosorbent assay (ELISA) or a
commercially available latex agglutination test but these tests are not widely used in the United States.
Microscopically, vibrios are gram-negative, straight or slightly curved rods (Figure 1).
When stool specimen from patients with cholera are examined using darkfield microscopy, the bacilli exhibit
characteristic rapid darting or shooting-star motility. However, direct microscopic examination of stools by any
method is not commonly used for laboratory diagnosis of enteric bacterial infections.
Aeromonas spp. are gram-negative, straight rods with rounded ends or coccobacilli. No molecular or serologic
methods are available for direct detection of Aeromonas spp. Cells of C. violaceum are slightly curved, medium
to long, gram-negative rods with rounded ends. A polymerase chain reaction (PCR) amplification assay has
been developed for identification of C. violaceum.
Cultivation:
Media of Choice
Stool cultures for Vibrio spp. are plated on the selective medium thiosulfate citrate bile salts sucrose (TCBS)
agar.
TCBS contains 1% sodium chloride, bile salts that inhibit the growth of gram-positive organisms, and sucrose
forthe differentiation of the various Vibrio spp. Bromothymol blue and thymol blue pH indicators are added to
the medium. The high pH of the medium (8.6) inhibits
the growth of other intestinal flora. Although some Vibrio spp. grow very poorly on this medium, those that
grow well produce either yellow or green colonies, depending on whether they are able to ferment sucrose
(which produces yellow colonies).
Figure 1 Gram stain of Vibrio parahaemolyticus
100
Arranged by Sarah Mohssen
Section I– Microbiology By Nada Sajet
Alkaline peptone water (pH 8.4) may be used as an enrichment broth for obtaining growth of vibrios from
stool. After inoculation,the broth is incubated for 5 to 8 hours at 35°C and then subcultured to TCBS.
Chromogenic Vibrio agar, which was developed for the recovery of Vibrio parahaemolyticus from seafood,
supports the growth of other Vibrio spp. Colonies on this agar range from white to pale blue and violet.
Aeromonas spp. are indistinguishable from Yersinia enterocolitica on modified cefsulodin-irgasan-novobiocin
(CIN) agar (4 μg/mL of cefsulodin); therefore, it is important to perform an oxidase test to differentiate the two
genera. Aeromonas agar is a relatively new alternative medium that uses D-xylose as a differential
characteristic.
These organisms typically grow on a variety of differential and selective agars used for the identification of
enteric pathogens. They are also beta-hemolytic on blood agar.
C. violaceum grows on most routine laboratory media. The colonies may be beta-hemolytic and have an
almond like odor. Most strains produce violacein, an ethanolsoluble violet pigment.
All of the genera considered in this lecture grow well on 5% sheep blood, chocolate, and MacConkey agars.
They also grow well in the broth of blood culture systems and in thioglycollate or brain-heart infusion broths.
Incubation Conditions and Duration
These organisms produce detectable growth on 5% sheep blood and chocolate agars when incubated at 35°C
in carbon dioxide or ambient air for a minimum of 24 hours. MacConkey and TCBS agars only should be
incubated at 35°C in ambient air. The typical violet pigment of C. violaceum colonies (Figure 2) is optimally
produced when cultures are incubated at room temperature (22°C).
Figure 2 Colonies of Chromo bacterium violaceum on DNase agar. Note violet pigment
101
Arranged by Sarah Mohssen
Section I– Microbiology By Nada Sajet
Organism Medium Appearance
Large, round, raised, opaque; most pathogenic strains are beta-hemolytic except A.
caviae, which is usually nonhemolytic Both NLF and LF
BA
Mac
Aeromonas spp.
Round, smooth, convex, some strains are beta-hemolytic; most
colonies appear black or very dark purple; cultures smell of ammonium cyanide
(almond-like) NLF
BA
Mac
Chromobacterium
violaceum
Medium to large, smooth, opaque, iridescent with a greenish hue; V. cholerae, V.
fluvialis, and V. mimicus can be beta-hemolytic NLF except V. vulnificus, which may
be LF
BA
Mac
Vibrio spp. and
Grimontia
hollisae
Medium to large, smooth, opaque, iridescent with a greenish hue; may be betahemolytic NLF
BA
Mac
P. damsela
BA, 5% sheep blood agar; Mac, MacConkey agar; LF, lactose fermenter,
NLF, non–lactose fermenter.
Colonial Appearance
Table 3 describes the colonial appearance and other distinguishing characteristics (e.g., hemolysis and odor)
of each genus on 5% sheep blood and MacConkey agars. The appearance of Vibrio spp. on TCBS is shown in
Figure ( 3).
Table( 3 ) Colonial Appearance and Characteristic
Figure 3 Colonies of Vibrio cholerae (A) and V. parahaemolyticus (B) on TCBS agar.
102
Arranged by Sarah Mohssen
Section I– Microbiology By Nada Sajet
Approach to identification
The colonies of these genera resemble those of the family Enterobacteriaceae but can be distinguished notably
by their positive oxidase test result (except for V. metschnikovii, which is oxidase negative). The oxidase test
must be performed from 5% sheep blood or another medium without a fermentable sugar (e.g., lactose in
MacConkey agar or sucrose in TCBS), because fermentation of a
carbohydrate results in acidification of the medium, and a false-negative result may occur if the surrounding pH
is below 5.1. Likewise, if the violet pigment of a suspected C. violaceum isolate interferes with performance of
the oxidase test, the organism should be grown under anaerobic conditions (where it cannot produce pigment)
and retested.
The reliability of commercial identification systems has not been widely validated for identification of these
organisms, although most are listed in the databases of several systems. The API 20E system (bioMérieux,
St.Louis, Missouri) is one of the best for vibrios. Because the inoculum is prepared in 0.85% saline, the amount
of salt often is enough to allow growth of the halophilic (salt-loving) organism.
The ability of most commercial identification systems to accurately identify Aeromonas organisms to the
species level is limited and uncertain, and with some kits, difficulty arises in separating Aeromonas spp. from
Vibrio spp. Therefore, identification of potential pathogens should be confirmed using conventional
biochemical tests or serotyping. show several characteristics that can be used to presumptively group Vibrio
spp., Aeromonas spp., and Chromobacterium violaceum
Figure 4 String test used to differentiate Vibrio spp. (positive( from
Aeromonas spp. and P. shigelloides (negative).
103
Arranged by Sarah Mohssen
Section I– Microbiology By Nada Sajet
Comments Regarding Specific Organisms
V. cholerae and Vibrio mimicus are the only Vibrio spp. That do not require salt for growth. Therefore, a key
test for distinguishing the halophilic species from V. cholerae, V. mimicus, and Aeromonas spp. is growth in
nutrient broth with 6% salt. Furthermore, the addition of 1% NaCl to conventional biochemical tests is
recommended to allow growth of halophilic species.
The string test can be used to differentiate Vibrio spp. from Aeromonas spp. In this test, organisms are
emulsified in 0.5% sodium deoxycholate, which lyses Vibrio cells, but not those of Aeromonas spp. Cell lysis
releases DNA, which can be pulled up into a string with an inoculating loop Figure ( 4).
A Vibrio static test using 0/129 (2,4-diamino-6,7-diisopropylpteridine)–impregnated disks also has been used
to separate vibrios (susceptible) from other Oxidase positive glucose fermenters (resistant) and to differentiate
V. cholerae O1 and non-O1 (susceptible) from other Vibrio spp. (resistant). However, recent strains of V.
cholerae O139 have demonstrated resistance, so the dependability of this test is questionable.
Serotyping should be performed immediately to further characterize V. cholerae isolates. Toxigenic strains of
serogroup O1 and O139 can be involved in cholera epidemics. Strains that do not type in either antiserum are
identified as non-O1. Although typing sera are commercially available, isolates of V. cholerae are usually sent
to a reference laboratory for serotyping.
Identification of V. cholerae or V. vulnificus should be reported immediately because of the life-threatening
nature of these organisms.
Aeromonas spp. and C. violaceum can be identified using the characteristics. Aeromonas spp. identified in
clinical specimens should be identified as A. hydrophilia, A. caviae complex, or A. veronii complex.
Pigmented strains of C. violaceum are so distinctive that a presumptive identification can be made based on
colonial appearance, oxidase, and Gram staining. Nonpigmented strains (approximately 9% of isolates) may be
differentiated from Pseudomonas, Burkholderia, Brevundimonas, and Ralstonia organisms based on glucose
fermentation and a positive test result for indole. Negative lysine and ornithine reactions are useful criteria for
distinguishing C. violaceum from Plesiomonas shigelloides. Failure to ferment either maltose or mannitol also
differentiates C. violaceum from Aeromonas spp.
Serodiagnosis
Agglutination, vibriocidal, or antitoxin tests are available for diagnosing cholera using acute and convalescent
sera. However, these methods are most commonly used for epidemiologic purposes. Serodiagnostic techniques
are not generally used for laboratory diagnosis of infections caused by the other organisms discussed in this
lecture.
Antimicrobial susceptibility testing and therapy:
Two components of the management of patients with cholera are rehydration and antimicrobial therapy
(Table4). Antimicrobials reduce the severity of the illness and shorten the duration of organism shedding. The
drug of choice for cholera is tetracycline or doxycycline; however, resistance to these agents is known, and the
use of other agents, such as chloramphenicol, ampicillin, or trimethoprim-sulfamethoxazole, may be necessary.
104
Arranged by Sarah Mohssen
Section I– Microbiology By Nada Sajet
The Clinical and Laboratory Standards Institute (CLSI) has established methods for testing for V. cholerae, and
the CLSI document should be consulted for this purpose.
The need for antimicrobial intervention for gastrointestinal infections caused by other Vibrio spp. and
Aeromonas spp. is less clear. However, extraintestinal infections with these organisms and with C. violaceum
can be lifethreatening, and directed therapy is required.
C. violaceum is often resistant to β-lactams and colistin. Antimicrobial agents with potential activity are
listed, where appropriate, in Table 4. It is important to note these organisms’ ability to show resistance to
therapeutic agents; especially noteworthy is the ability of Aeromonas spp. to produce various beta-lactamases.
Potential Resistance to
Therapeutic Options
Species Therapeutic Options
Adequate rehydration plus
antibiotics. Recommended agents
include tetracycline or doxycycline;
alternatives include
trimethoprimsulfamethoxazole,
erythromycin,
chloramphenicol, and quinolones
Adequate rehydration plus
antibiotics. Recommended agents
include tetracycline or doxycycline;
alternatives include trimethoprimsulfamethoxazole,
erythromycin,
chloramphenicol, and quinolones
Vibrio cholerae
Similar to resistance reported
for V. cholerae
No definitive guidelines. For
gastroenteritis, therapy may not
be needed; for wound infections
and septicemia, potentially active
agents include tetracycline,
chloramphenicol, nalidixic acid,
most cephalosporins, and
quinolones
Other Vibrio spp.
Capable of producing various
beta-lactamases that
mediate resistance to
penicillins and certain
cephalosporins
No definitive guidelines. For
gastroenteritis, therapy may not
be needed; for soft tissue
infections and septicemia,
potentially active agents include
ceftriaxone, cefotaxime,
ceftazidime, imipenem,
aztreonam, amoxicillinclavulanate,
quinolones, and
trimethoprim-sulfamethoxazole
Aeromonas spp.
Activity of penicillins is
variable; activity of firstand
No definitive guidelines. Potentially
active agents include cefotaxime,
Chromobacterium
violaceum
Table 4 Antimicrobial Therapy and Susceptibility Testing
105
Arranged by Sarah Mohssen
Section I– Microbiology By Nada Sajet
second-generation
cephalosporins is poor
ceftazidime, imipenem, and
aminoglycosides
*Validated testing methods include standard methods recommended by the Clinical and Laboratory
Standards Institute (CLSI) and commercial methods
approved by the U.S. Food and Drug Administration (FDA).
Prevention:
No cholera vaccine is available in the United States. Two oral vaccines are available outside the United States
although the World Health Organization no longer recommends immunization for travel to or from
cholerainfected areas. Individuals who have recently shared food and drink with a patient with cholera (e.g.,
household contacts) should be given chemoprophylaxis with tetracycline, doxycycline, or trimethoprimsulfamethoxazole. However, mass chemoprophylaxis during epidemics is not indicated.
106
Arranged by Sarah Mohssen
Section I– Microbiology By Dr. Mohammed Ayad
Lecture Six
Genus Campylobacter
Campylobacter jejuni and C. coli can colonies the intestinal tract of most mammals and birds and are the most
frequently isolated Campylobacter species in humans with gastro-enteritis. Transmission from animals to
humans is mainly through consumption and handling of animal food products but also direct contact with
colonized animals may contribute to human Campylobacteriosis.
The fecal contamination of meat (especially poultry meat) during processing is
Considered to be a major source of human food-borne disease.
In humans, extra intestinal infections, including bacteremia, Guillain–Barré syndrome, reactive arthritis, and
abortion could occur as sequelae of infection.
Detection of intestinal colonization is based on the isolation of the organism from feces, rectal swabs and / or
caecal contents.
Alternatively, their high motility can be exploited using filtration techniques for isolation. Preliminary
confirmation of isolates can be made by light microscopy. The organisms in the log growth phase are short and
S-shaped in appearance, while coccoid forms predominate in older cultures.
Under phase-contrast microscopy the organisms have a characteristic rapid corkscrew-like motility. Phenotypic
identification is based on reactions under different growth conditions. Biochemical and molecular tests can be
used to confirm various Campylobacter species. Polymerase chain reaction assays also can be used for the
direct detection of C. jejuni and C. coli.
In 1991 a revision of the taxonomy and nomenclature of the genus Campylobacter was proposed. According to
Bergey’s Manual, the genus Campylobacter comprises sixteen species and six subspecies. More recently, two
additional species have been added.
Members of the genus are typically gram-negative, non-spore-forming, S-shaped or spiral shaped bacteria (0.2–
0.8 μm wide and 0.5–5 μm long), with single polar flagella at one or both ends, conferring a characteristic
corkscrew-like motility. These bacteria require micro aerobic conditions, but some strains also grow aerobically
or anaerobically. They neither ferment nor oxidise carbohydrates. Some species, particularly C. jejuni, C. coli
and C. lari, are thermophilic, growing optimally at 42°C. They can colonies mucosal surfaces, usually the
intestinal tract, of most mammalian and avian species tested. The species C. jejuni includes two subspecies (C.
jejuni subsp. jejuni and C. jejuni subsp. doylei) that can be discriminated on the basis of several phenotypic
tests (nitrate reduction, selenite reduction, sodium fluoride, and safranine) and growth at 42°C (subsp. doylei
does not grow at 42°C). Subspecies jejuni is much more frequently isolated then subspecies doylei.
Passive filtration
Passive filtration, a method developed by Steele and McDermott for the need for selective media; thus it is very
useful for the isolation of antimicrobial-sensitive Campylobacter species.
The method does not use expensive selective media; it may be used in laboratories with fewer resources.
For passive filtration, feces are mixed with phosphorylate buffered saline (approximately 1/10 dilution) to
produce a suspension. Approximately 100 μl of this suspension are then carefully layered on to a 0.45 or 0.65
μm filter, which has been previously placed on top of a non-selective blood agar plate. Care must be taken not
to allow the inoculum to spill over the edge of the filter. The bacteria are allowed to migrate through the filter
107
Arranged by Sarah Mohssen
Section I– Microbiology By Dr. Mohammed Ayad
for 30–45 minutes at 37°C or room temperature. The filter is then removed, the fluid that has passed through
the filter is spread with a sterile glass or plastic spreader, and the plate is incubated micro aerobically at 42°C
(Micro aerobic atmospheres of 5–10% oxygen, 5–10% carbon dioxide are required for optimal growth).
Specimen Types
Fresh stool specimens or rectal swabs from patients suspected to be infected with Campylobacter species, or
meat.
Stool specimens, swabs, and food samples should not be older than 24 to 48 hours. Swabs must be inserted into
appropriate transport media (e.g., Cary Blair medium). If not processed immediately, store specimens in
transport media at 4 to 8° C; avoid exposure to oxygen.
Samples Processing
Streak the specimen for dilution as soon as possible after it is received in the laboratory onto Butzler or
Skirrow. Meat or other foods should first be minced or homogenized and then inoculated directly or after
suspension in a small amount of peptone broth onto the medium.
If material is being cultured directly from a swab, roll the swab over a small area of the surface at the edge;
then streak from this inoculated area.
Incubate inoculated plates, protected from light, at 35 ± 2 ° C or 42 ±2° C in a reduced oxygen, increased CO2
(micro aerobic) atmosphere. The incubation at 42° C results in better selectivity, but is inhibitory to
Campylobacter jejuni subsp. doylei and a variety of other species.
The micro aerobic atmosphere can be achieved by using Campy gaspak. An incubation period of 2 to 3 days is
usually sufficient, but 5 to 7 days of incubation were shown to increase the isolation rates.
Cultivation Media
Campylobacter agar known as Butzler plus Campylobacter agar known as Skirrow; are 2 selective media for
the isolation of Campylobacter species from clinical specimens.
The genus Campylobacter includes important pathogens causing intestinal infections such as diarrhea. In rural
areas and in less developed countries, Campylobacters are at least as frequent as Salmonella as intestinal
pathogens.
The most frequently isolated species is Campylobacter jejuni subsp. jejuni, whereas C. coli and C. lari are
rarer.
Butzler, in 1973, developed a selective medium containing five antimicrobials. Skirrow, in 1977, reported a
selective culture medium containing three antimicrobial agents.
In Butzler, meat extract and peptone provide the nutrients, and sodium chloride maintains the osmotic stability.
Novobiocin and colistin inhibit gram negative enteric bacteria; cephazolin and bacitracin inhibit gram positive
bacteria. Cycloheximide inhibits many fungi.
In Skirrow, heart infusion, casein peptone, and yeast extract provide nutrients, and sodium chloride maintains
the osmotic stability. Vancomycin inhibits gram positives, and trimethoprime and polymyxin B inhibit many
gram negative organisms. Lysed horse blood provides nutrients and heme for bacterial catalase.
Isolate Confirmation
108
Arranged by Sarah Mohssen
Section I– Microbiology By Dr. Mohammed Ayad
A pure culture is required for confirmatory tests, but a preliminary confirmation can be obtained by direct
microscopic examination of suspect colony material.
1- Identification on solid medium: on Skirrow or other blood-containing agars, characteristic
Campylobacter colonies are slightly pink, round, convex, smooth and shiny, with a regular edge. On
charcoal-based media, the characteristic colonies are grayish, flat and moistened, with a tendency to
spread, and may have a metal sheen.
2- Microscopic examination of morphology and motility: material from a suspect colony is suspended in
saline and evaluated, preferably by a phase-contrast microscope, for characteristic, spiral or curved
slender rods with a corkscrew-like motility. Older cultures show less motile coccoid forms.
3- Detection of oxidase: take material from a suspect colony and place it on to a filter paper moistened
with oxidase reagent. The appearance of a violet or deep blue color within 10 seconds is a positive
reaction.
4- Micro aerobic growth at 25°C: Inoculate the pure culture on to a non-selective blood agar plate and
incubate at 25°C in a micro aerobic atmosphere for 48 hours.
5- Aerobic growth at 41.5°C, inoculate the pure culture on to a non-selective blood agar plate and
incubate at 41.5°C in an aerobic atmosphere for 48 hours.
6- Latex agglutination tests for confirmation of pure cultures of C. jejuni / C. coli (often also including C.
lari) are commercially available.
Helicobacter pylorus
Helicobacter pylorus (H. pylori) is a spiral-shaped bacterium that is found in the gastric mucous layer or
adherent to the epithelial lining of the stomach.
H. pylori cause more than 90% of duodenal ulcers and up to 80% of gastric ulcers. Spicy food, acid, stress, and
lifestyle were considered the major causes of ulcers.
Majority of patients were given long-term medications, such as H2 blockers, and more recently, proton pump
inhibitors, without a chance for permanent cure.
These medications relieve ulcer-related symptoms, heal gastric mucosal inflammation, and may heal the ulcer,
but they do not treat the infection.
When acid suppression is removed, the majority of ulcers, particularly those caused by H. pylori, recur. So
most ulcers which caused by H. pylori, appropriate antibiotic regimens can successfully eradicate the infection
in most patients, with complete resolution of mucosal inflammation and a minimal chance for recurrence of
ulcers; approximately 2/3 of the world’s population is infected with H. pylori.
H. pylori are more prevalent among adults and lower socioeconomic groups.
Most persons who are infected with H. pylori never suffer any symptoms related to the infection; however, H.
pylori cause chronic active, chronic persistent and atrophic gastritis in adults and children. Infection with H.
pylori also causes
duodenal and gastric ulcers.
Infected persons have a 2- to 6-fold increased risk of developing gastric cancer and mucosal associatedlymphoid-type lymphoma compared with their uninfected counterparts.
109
Arranged by Sarah Mohssen
Section I– Microbiology By Dr. Mohammed Ayad
The role of H. pylori in non-ulcer dyspepsia remains unclear. Peptic ulcer disease at some point in their
lifetime. Each year there are 500,000 to 850,000 new cases of peptic ulcer disease and more than one million
ulcer-related hospitalizations.
The pain typically occurs when the stomach is empty, between meals and in the early morning hours, but it can
also occur at other times.
It may last from minutes to hours and may be relieved by eating or by taking antacids.
Less common ulcer symptoms include nausea, vomiting, and loss of appetite. Bleeding can also occur;
prolonged bleeding may cause anemia leading to weakness and fatigue.
Persons with active gastric or duodenal ulcers or documented history of ulcers should be tested for H. pylori,
and if found to be infected, they should be treated.
Several methods may be used to diagnose H. pylori infection. Serological tests that measure specific H. pylori
IgG antibodies can determine if a person has been infected. The sensitivity and specificity of these assays range
from 80% to 95% depending upon the assay used.
Other diagnostic method is the breath test. In this test, the patient is given either 13C or 14C-labeled urea to
drink. H. pylori metabolize the urea rapidly, and the labeled carbon is absorbed. This labeled carbon can then be
measured as CO2 in the patient’s expired breath to determine whether H. pylori is present. The sensitivity and
specificity of the breath test ranges from 94% to 98%.
During endoscopy, biopsy specimens of the stomach and duodenum are obtained and the diagnosis of H. pylori
can be made by several methods:
1. The biopsy urease test - a colorimetric test based on the ability of H. pylori to produce urease; it
provides rapid testing at the time of biopsy.
2. Histological identification of organisms - considered the gold standard of diagnostic tests.
3. Culture of biopsy specimens for H. pylori, which requires an experienced laboratory and is necessary
when antimicrobial susceptibility testing is desired.
Therapy for H. pylori infection consists of 10 days to 2 weeks of one or two effective antibiotics, such as
amoxicillin, tetracycline (not to be used for children <12 yrs.), metronidazole, or clarithromycin, plus either
ranitidine bismuth citrate, bismuth subsalicylate, or a proton pump inhibitor.
Acid suppression by the H2 blocker or proton pump inhibitor in conjunction with the antibiotics helps in relieve
ulcer-related symptoms (i.e., abdominal pain, nausea), helps heal gastric mucosal inflammation, and may
enhance efficacy of the antibiotics against H. pylori at the gastric mucosal surface.
110
Arranged by Sarah Mohssen
Section I– Microbiology By Dr. Mohammed Ayad
Lecture Seven
Haemophilus
is a genus of Gram-negative, pleomorphic, coccobacilli bacteria belonging to the Pasteurellaceae family. While
Haemophilus bacteria are typically small coccobacilli, they are categorized as pleomorphic bacteria because of
the wide range of shapes they occasionally assume.
All Haemophilus are nonmotile, they are minute in size, H. influenzae measuring 0.3 micrometer across and up
to 2 micrometers long.
The genus includes commensal organisms along with some significant pathogenic species such as H. influenzae
a cause of sepsis and bacterial meningitis in young children and H. ducreyi, the causative agent of chancroid.
All members are either aerobic or facultative anaerobic.
Members of the Haemophilus genus will not grow on blood agar plates as all species require at least one of the
following blood factors for growth: hemin (factor X) and/or nicotinamide adenine dinucleotide (factor V).
Chocolate agar is an excellent Haemophilus growth medium as it allows for increased accessibility to these
factors. Alternatively, Haemophilus is sometimes cultured using the "Staph streak" technique; both
Staphylococcus and Haemophilus organisms are cultured together on a single blood agar plate. In this case,
Haemophilus colonies will frequently grow in small "satellite" colonies around the larger Staphylococcus
colonies because the metabolism of Staphylococcus produces the necessary blood factor by-products required
for Haemophilus growth
Most strains of H. influenzae are opportunistic pathogens; that is, they usually live in their host without causing
disease, but cause problems only when other factors (such as a viral infection, reduced immune function or
chronically inflamed tissues, e.g. from allergies) create an opportunity. They infect the host by sticking to the
host cell using Trimeric Auto transporter Adhesins (TAA).
Naturally acquired disease caused by H. influenzae seems to occur in humans only. In infants and young
children, H. influenzae type b (Hib) causes bacteremia, pneumonia, epiglottitis and acute bacterial meningitis.
On occasion, it causes cellulitis, osteomyelitis, and infectious arthritis.
Due to routine use of the Hib conjugate vaccine in the U.S.A. since 1990, the incidence of invasive Hib
disease has decreased to 1.3/100,000 in children. However, Hib remains a major cause of lower respiratory tract
infections in infants and children in developing countries where the vaccine is not widely used.
Unencapsulated H. influenzae strains are unaffected by the Hib vaccine and cause ear infections (otitis media),
eye infections (conjunctivitis), and sinusitis in children, and are associated with pneumonia.
111
Arranged by Sarah Mohssen
Section I– Microbiology By Dr. Mohammed Ayad
Figure shows Gram film H.influenzae in the sputum (coccobacilli)
Figure shows Haemophilus influenzae which requires X and V factors for growth. In this culture
Haemophilus has only grown around the paper disc that has been impregnated with X and V factors. There
is no bacterial growth around the discs that only contain either X or V factor
Laboratory Diagnosis
Most Haemophilus species are normal inhabitants of upper respiratory tract of humans and other
animals.
The species of Haemophilus that most frequently cause human infections are H. influenzae (respiratory
and invasive infections), H. aegyptius (acute conjunctivitis) and H. parainfluenzae, H. haemolyticus,
H. parahaemolyticus, H. aprophilus, H. paraphrophilus and H. segnis (abscesses and infective
endocarditis)
These are pleomorphic Gram negative coccobacilli.
The laboratory diagnosis of H. influenzae is based on growth and colony morphology, and cell
morphology on Gram staining.
112
Arranged by Sarah Mohssen
Section I– Microbiology By Dr. Mohammed Ayad
These are confirmed by the haemophilic character of the genus that reflects a requirement for either or
both of the two factors called X and V.
Culture and identification for Haemophilus
Direct Examination
Perform Gram stain
Gram staining shows: Gram negative pleomorphic thin rods or coccobacilli.
Culture
o Inoculate samples onto chocolate agar media
o Incubate at 37°C in aerobic atmosphere containing 3-5 % CO2 (i.e. candle jar) for 24-48 hours.
Colony morphology
On chocolate agar: large flat, colorless to gray or opaque colonies.
Colonies are 0.5 – 1mm circular, low convex, smooth, and pale grey and transparent.
With a characteristic “mouse nest” odor. No haemolysis or discoloration is seen.
Encapsulated strains appear more mucoid (watery) and non capsulated strains appear as compact
grayish colonies.
Note: Growth is enhanced on chocolate agar and satellitism around Staphylococcus aureus is seen on blood
agar.
Biochemical reactions for differentiation:
Confirmatory tests for X and V factor requirements as follow:
1. Inoculate a single suspected colony from chocolate agar onto Mueller Hinton agar plates.
2. Place commercially available X, V, and XV factor discs/strips on streaked plates.
3. Incubate plates at 37°C in 3-5 % CO2 atmosphere for 18-24 hours.
4. Observe growth around the discs and H. influenzae will only grow around the combined XV disc.
Note that if only X and V factor discs (without XV) are applied, place them at least 2 cm apart and H.
influenzae will grow between the two discs.
113
Arranged by Sarah Mohssen
Section I– Microbiology By Dr. Mohammed Ayad
Serological identification (serotyping) of Haemophilus influenzae
Slide agglutination test.
1) Agglutinating antisera for serotypes “a” to “f” are available commercially. Such sera contain
antibodies directed towards somatic antigens present in patient’s sera which result in agglutination.
2) Apply one drop of normal saline on a slide and make a homogenous suspension with a single
suspected colony of H. influenzae.
3) Add one drop of specific antiserum and mix thoroughly.
114
Arranged by Sarah Mohssen
Section I– Microbiology By Dr. Mohammed Ayad
Lecture Eight
Sexually transmitted diseases (STD)
Genus Neisseria
The family Neisseriaceae includes the many genera, important one is genus Neisseria. The Neisseriae are gramnegative cocci that usually occur in pairs. Neisseria gonorrhea (gonococci) and Neisseria meningitidis
(meningococci) are pathogenic for humans and typically are found associated with or inside polymorphonuclear
cells.
Other neisseriae are normal inhabitants of the human respiratory tract, rarely if ever cause disease, and occur
extracellularly.
N. catarrhalis (Moraxella or Branhamella catarrhalis)
N. sicca
N. subflava
N. lactamica
N. mucosa
Common or general characteristics of Neisseria are:
Gram negative diplococci, kidney shape, with flat or concave opposing edge, oxidase positive, pathogenic to
human only, Ferment carbohydrates and producing acid only, pyrogenic (produce pus), Non - hemolytic, nonmotile, non-spore forming, intracellular while non-pathogenic are extracellular, needs 48h of culturing time,
they are rapidly killed by drying, sunlight and many disinfectants, the non-pathogenic species can grow on
simple media while the pathogenic species need enriched media e.g. blood and chocolate agar, Gonococci and
meningococci are closely related with 70% DNA homology and are differentiated by few laboratory tests and
specific characteristics.
Neisseria gonorrhea (gonococcus)
Reservoir: human genital tract
Transmission: Sexual contact, birth
Sensitive to drying and cold
Gonorrhea; which differs in male than in female as in male it causes urethritis associated with yellowish
mucopurulent discharge from anterior urethra and dysuria, the infection can extend to the epididymis leading to
epididymitis and if not treated it will be complicated by fibrosis and urethral stricture.
In female the first site of infection is the cervix causing cervicitis, the infection is going to spread from cervix to
the vagina causing vaginitis and presented by vaginal discharge which is mucopurulent in nature, if not treated
it will spread upward to involve fallopian tube resulting in salpingitis plus PID (pelvic inflammatory disease)
which leads to fibrosis with tube stricture leading to infertility due to tubal damage.
115
Arranged by Sarah Mohssen
Section I– Microbiology By Dr. Mohammed Ayad
Rectal involvement will lead to proctitis; the patient presenting symptoms is purulent discharge from anus with
tensmus
Eye infection (infection of the conjunctival sac); occur in new born babies during their passage through
infected birth canal causing a condition called (ophthalmia neonatorum) which is a very serious condition and if
untreated it will lead to blindness. This case could be prevented through using antimicrobial agent as silver
nitrate and erythromycin
Throat infection (Gonococcal pharyngitis)
Sometimes Gonococcal can cause systemic infection as it disseminated by the blood stream to the distant
organs (skin, bone, joints) to gain arthritis or meningitis or endocarditis or vasculitis
Laboratory diagnosis
Specimens: Pus and secretion are taken from the urethra, cervix, rectum, conjunctiva, throat or
synovial fluid for culture and smear.
Smears: Gram stained smears of urethral or endocervical exudates reveal many diplococci within pus
cells. In male the finding of numerous neutrophils containing gram negative diplococci in a smear of
urethral exudates permits a provisional diagnosis of gonococcal infection and indicates that the
individual should be treated. In contrast, a positive culture is needed to diagnose gonococcal infection
in female
Culture: Immediately after collection of pus or mucous is streaked on enriched selective media such as
Thayer – Martin which is a chocolate agar + Enrichment element +Antibiotics like colistin (against G
– ve rods); vancomycin (against G + ve), Nystatin (against fungi)
Modified Thayer - Martin: same as the above culture medium but plus trimethoprim (inhibit proteus)
It needs 5 – 7% CO2 (candle jar, CO2 generating kit); Humid atmosphere; 35 – 37 C◦, 72 incubation hours
Biochemical test:
I. Oxidase test (N, N, N, N, tetramethyl-P-phenylenediamine) positive for all Neisseria species,
when get contact with oxidase enzyme they will gain purple color i.e. positive oxidase test.
II. Sugar fermentation test: (important in differentiation between Neisseria spp.)
Sucrose + Maltose + Glucose is (negative + positive + positive) regarding N. meningitidis, (negative + negative
+ positive) regarding N. gonorrhea and regarding M. catarrhalis all are negative
III- Nitrate reduction into nitrite it is positive, while in Moraxella catarrhalis it is negative
Serology: It is not of great value in the diagnosis to detect antibodies against this bacterium; because
of the antigen diversity of Gonococci and there is delay in the development of these antibodies, so it
is more important to detect gonococcal antigens using elisa (EIA) or using radioimmunoassay (RIA).
116
Arranged by Sarah Mohssen
Section I– Microbiology By Dr. Mohammed Ayad
PCR (molecular method): Detection of gonococcal nucleic acid using DNA probe which can detect
nucleic acid of the microorganism, this is the most sensitive and specific method.
Antigenic and virulence structures
Gonococci are antigenically heterogeneous both in vivo and in vitro. These antigenic changes help the
microorganism to escape from the immune system and it includes:
a- Pilli which is responsible for attachment to mucosal surfaces, also inhibit phagocytic uptake, and
antigenic (immunogenic) variation as more than 1 million variants are found
b- Porin (por) protein (protein I) that extends through the gonococcal cell membrane, each strain of
gonococcus expresses only one type of por.
c- Opacity (Opa) proteins (protein II) responsible for attachment to mucosal surfaces
d- RMP (protein III) It is associated with (Opa) protein in the formation of pores
e- Lipooligosaccharide (LOS) it has endotoxin effect and it is responsible for toxicity of gonococci
f- IgA protease it split IgA making it in non-functioning form, so IgA protease is a virulent factor that
enhances colonization of bacteria.
Treatment and prevention
More than 20% of current isolates of N. gonorrhoea are resistant to penicillin, A single intramuscular dose of
ceftriaxone is the recommended therapy for uncomplicated gonococcal infections. Intramuscular
spectinomycin is indicated in patients who are allergic to cephalosporines. Many patients with gonorrhea have
coexisting Chlamydia infections; therefore Doxycycline is effective against Chlamydia.
Prevention of gonorrhea involves evaluation and management of sexual contacts, plus antibiotic
prophylactically in an exposed individual even in the absence of symptoms. The use of barrier methods is also
a preventive measure against gonorrhea as is the case for all sexually transmitted infections. No vaccine is
available for gonorrhea.
Neisseria meningitidis (meningococcus)
N. meningitidis is one of the most frequent causes of meningitis. Infection with N. meningitidis can also take the
form of a fulminant meningococcemia, with intravascular coagulation, circulatory collapse, and potentially fatal
shock, but without meningitis.
In each case, symptoms can occur with extremely rapid onset and great intensity. Outbreaks of meningitis, most
common in winter and early spring, are favored by close contact between individuals, such as occurs in schools,
institutions, and military barracks. N. meningitidis tends to strike young, previously well individuals and can
progress over a matter of hours to death.
It is gram-negative, kidney coffee bean-shaped diplococci with large antigenic capsule, grows on chocolate (not
blood) agar in 5% C02 atmosphere and ferments maltose in contrast to gonococci
117
Arranged by Sarah Mohssen
Section I– Microbiology By Dr. Mohammed Ayad
It reservoir is human nasopharynx (5-10% carriers) and its transmission is through respiratory droplets; as it is
an oropharyngeal colonizer, so it spreads to the meninges via the bloodstream and disease occurs in only small
percentage of colonized individuals.
Antigenic and virulence structures
a- Capsule: At least 13 serogroups of meningococci have been identified by immunologic specificity and
capsular polysaccharides the most important serogroups associated with disease in human are
A,B,C,Y, W135 ,they are associated with fulminant sepsis with or without meningitis, which is used
for the preparation of vaccines
b- Outer membrane protein (OMP): about 20 antigenic types, used for serotyping
c- Pilli and outer membrane proteins important in ability to colonize and invasion
d- IgA protease it cleaves IgA and allows oropharynx colonization
e- Opa protein for attachment
f- Lipooligopolysaccharide (Endotoxin) responsible for fever, septic shock in meningococcemia.
Epidemiology
Transmission occurs through inhalation of respiratory droplets from a carrier or a patient in the early stages of
the disease. In addition to contact with a carrier
Risk factors for disease include:
1- Recent viral or Mycoplasma upper respiratory tract infection
2- Active or passive smoking
3- Complement deficiency (C5-C8)
In susceptible persons, pathogenic strains may invade the bloodstream and cause systemic illness after an
incubation period of 2 to 10 days. An incidence peak among adolescents and young adults led the Centers for
Disease Control (CDC) to recently recommend vaccination of this at risk group. Humans are the only natural
host
Diseases and pathogenicity
The source of the infection is either the patient or the carriers, the route of entry is through the nasopharynx by
droplet, and meningococci will attach to the epithelial cell by pili.
From the nasopharynx the meningococci will spread through the blood stream to the target organ causing
bacteremia, so the squeal is either meningitis or suffers from fulminating meningococcemia.
Meningitis: mainly in adult ages 11 to 55 years, it is usually begun suddenly with headache, vomiting and stiff
neck, this will progress to coma within few hours. Fulminating meningococcemia is more sever with high fever
and hemorrhagic rash; there may be disseminated intravascular coagulation and circulatory collapse (waterhouse- friderichsen syndrome).
118
Arranged by Sarah Mohssen
Section I– Microbiology By Dr. Mohammed Ayad
Laboratory diagnosis
a- Specimens: Blood, CSF, Nasopharyngeal swab are taken for carrier surveys
b- Smears as gram stained smear of CSF show typical Neisseria within polymorphonuclear leukocytes
c- Culture onto chocolate agar and Thayer - Martin media, incubated at 37 ºC
d- Serology as rapid detection test to measure antigens or antibodies to meningococcal polysaccharides
through latex agglutination test, to identify N. meningitidis capsular antigens in CSF, or by
Immunoelectrophoresis
e- PCR which is the most sensitive and specific method
Treatment
Bacterial meningitis is a medical emergency. Accordingly, antibiotic treatment cannot await a definitive
bacteriologic diagnosis.
Penicillin G is the drug of choice for treating meningococcal disease. In patient allergic to penicillin
chloramphenicol and cefotaxime (or ceftriaxone) can be used.
Prevention
a- Irradiation of the carrier states (major source)
b- Isolation of the patient
c- Chemoprophylaxis for contact people
d- Vaccination with a conjugate meningococcal vaccine which was approved in the United States in 2005
for use in adolescents and adults ages 11 to 55 years, and has replaced the Unconjugated
polysaccharide vaccine; this is a tetravalent vaccine that contains capsular polysaccharides from
serogroups A, C, W-135, and Y conjugated to diphtheria toxoid
Moraxella catarrhalis
Previously they are called Neisseria catarrhalis, the name changed to Branhamella and now they are a
separated genus “Moraxella”. They are normally found in upper respiratory tract especially among school
children as (50% of school children carry this microorganism), it may cause pneumonia, otitis media, sinusitis
and other infections.
It is nonmotile, gram-negative coccobacilli that are generally found in pairs. Moraxella are aerobic, oxidase
positive, non-fastidious organisms, can grow on nutrient agar, and does not ferment carbohydrates.
119
Arranged by Sarah Mohssen
Section I– Microbiology By Dr. Mohammed Ayad
Lecture Nine
Legionella
Legionella was first recovered from the blood of a soldier more than 50 years ago, but its importance as a
human pathogen was not recognized until 1976, when a mysterious epidemic of pneumonia struck members of
the Pennsylvania American Legion.
The disease was named Legionnaire's disease by the press. Within 6 months a bacterium, subsequently named
Legionella pneumophila, had been isolated and definitively established as the agent. A general term for disease
produced by Legionella species is legionellosis.
The most common presentation of Legionella pneumophila is acute pneumonia (legionellosis); potentially any
species of Legionella may cause the disease.
Extra pulmonary disease (e.g., pericarditis and endocarditis) is rare. Less often, disease presents as a
nonpneumonic epidemic, influenza like illness called Pontiac fever.
Structure, Classification, and Antigenic Types
Legionella species are Gram-negative bacilli. There are currently 39 species and 60 distinct antigenic types of
Legionella.
Legionella cells are thin, somewhat pleomorphic Gram-negative bacilli that measure 2 to 20 μm. Long,
filamentous forms may develop, particularly after growth on the surface of agar. Ultra structurally, Legionella
has the inner and outer membranes typical of Gram-negative bacteria. It possesses pili (fimbriae), and most
species are motile by means of a single polar flagellum.
Pathogenesis
Legionella bacilli reside in surface and drinking water and are usually transmitted to humans in aerosols. The
bacteria multiply intracellularly in alveolar macrophages.
Recruited neutrophils and monocytes, as well as bacterial enzymes, produce destructive alveolar inflammation.
Direct inoculation of surgical wounds by contaminated tap water has been described.
120
Arranged by Sarah Mohssen
Section I– Microbiology By Dr. Mohammed Ayad
Figure shows smear from the lung of a patient fatally infected with L pneumophila serogroup1,
demonstrating many thin, Gram-negative bacilli (arrows). These bacteria stain less intensely with safranin
than do enteric bacilli
Host Defenses
Nonspecific physical and inflammatory pulmonary defenses are important, but cell-mediated immunity is
No comments:
Post a Comment
اكتب تعليق حول الموضوع