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8/19/23

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In: Vitamin B: New Research ISBN 978-1-60021-782-1

Editor: Charlyn M. Elliot, pp. 121-137 © 2008 Nova Science Publishers, Inc.

Chapter VII

VITAMIN B TREATMENT AND

CARDIOVASCULAR EVENTS IN

HYPERHOMOCYSTEINEMIC PATIENTS

Marco Righetti∗

Nephrology and Dialysis Unit, Vimercate Hospital, Vimercate, Italy.

ABSTRACT

High total plasma homocysteine levels are detected not only in patients with

homocystinuria, a recessively inherited disease, but also in patients with renal failure,

hypothyroidism, and methyltetrahydrofolate reductase polymorphism. The most

important clinical signs of high plasma homocysteine values are thromboembolic

vascular occlusions of arteries and veins, cerebral impairment, osteoporosis, and

displacement of the lens. Cardiovascular disease is the primary reason of morbidity and

mortality in the general population, and it represents about 50% of the causes of

mortality of the patients with chronic renal failure. Folic acid, vitamin B6 and vitamin

B12, lower hyperhomocysteinemia acting on remethylation and transsulphuration

pathway. Vitamin B treatments don't often normalize plasma homocysteine levels, but

long-term effects of vitamin B therapy are effective in reducing the life-threatening

vascular risk of homocystinuric patients. Hyperhomocysteinemia is detected in patients

with chronic renal failure, and especially in patients with stage 5 of chronic kidney

disease. Clinical observational studies have shown different results about the effects of

high plasma homocysteine levels on cardiovascular disease in dialysis patients. In fact,

cardiovascular mortality has been associated not only with hyperhomocysteinemia, but

also in some studies with hypohomocysteinemia. These contrasting data are probably due

to the strict relationship between homocysteine and malnutrition-inflammation markers.

Dialysis patients are frequently affected by malnutrition-inflammation-atherosclerosis

syndrome, and consequently this severe clinical condition can interfere with


 Correspondence concerning this article should be addressed to Dr. Marco Righetti, U.O.C. di Nefrologia e

Dialisi, Ospedale di Vimercate, Via C. Battisti 23, Vimercate 20059, ITALIA. e-mail: righettim@hotmail.com.

122 Marco Righetti

homocysteine levels. I and my coworkers recently observed in a prospective clinical trial

that hemodialysis patients, submitted to vitamin B treatment, with low homocysteine

levels and high protein catabolic rate show a significantly higher survival rate as

compared with the other three subgroups. Prospective clinical studies, evaluating

homocysteine-lowering vitamin B therapy on cardiovascular events in patients with mild

hyperhomocysteinemia, have recently shown no clinical benefits. These results could be

misleading because a part of patients had normal homocysteine levels, follow-up time

may have been too short, and confounding factors has not been considered. To

summarize, this paper shows the hottest news regarding the effects of homocysteinelowering vitamin B therapy on cardiovascular events, exploring the intriguing puzzle of

homocysteine.

Keywords: homocysteine, folic acid, vitamin B, cardiovascular disease.

INTRODUCTION

About 50 years ago homocysteine’s story begins: just on 1955 Vincent du Vigneaud, an

American scientist born in Chicago on 18th May 1901, won the Nobel Prize in Chemistry. He

is considered homocysteine’s father because his researches focused principally on sulphurcontaining molecules and their metabolism like transmethylation and transsulphuration [1].

Homocystinuria and high plasma homocysteine concentrations were first described in the

60s. In 1962 Carson et al. [2] discovered homocysteine in the urine of subjects with cerebral

impairment and skeletal abnormalities, and then in 1969 McCully [3] observed in a postmortem study a link between homocysteine and vascular disease detecting extensive

atherosclerosis in patients with homocystinuria and high homocysteine levels.

Homocystinuria is a recessively inherited disease due to cystathionine beta-synthase

deficiency. Cystathionine beta-synthase catalyzes the first step in the transsulfuration process,

promoting the condensation of homocysteine with serine to form cystathionine. The

biochemical data of this rare metabolic inborn error are: hyperhomocysteinemia with 10

times higher levels than normal, hypermethioninemia, hypocysteinemia; while the clinical

findings are: thromboembolic vascular occlusion of arteries and veins, cerebral impairment,

osteoporosis, skeletal abnormalities, displacement of the lens.

In the last ten years the scientific interest for homocysteine and vitamin B therapy is

highly increased because of its strict relationship with cardiovascular events. This paper

shows the hottest news regarding the effects of homocysteine-lowering vitamin B therapy on

cardiovascular events, exploring the intriguing puzzle of homocysteine.

HOMOCYSTEINE METABOLISM

Homocysteine is a small, 135 Da, sulfur amino acid. Plasma homocysteine is chiefly

bound to albumin, but it exists also as free, non protein-bound, form. Total plasma

homocysteine includes all homocysteine fractions, both protein-bound and free.

Homocysteine is achieved from methionine’s demethylation, and it is then converted either to

Vitamin B Treatment and Cardiovascular Events in Hyperhomocysteinemic Patients 123

cysteine through the transsulfuration pathway or to methionine through the remethylation

process. In the transsulfuration pathway homocysteine is metabolised to cystathionine in a

reaction, requiring vitamin B6, catalysed by cystathionine beta-synthase; while, in the

remethylation process homocysteine acquires a methyl group either from 5-

methyltetrahydrofolate with a vitamin B12 dependent reaction, or from betaine (Figure 1).

Methionine

Hcy

Betaine

Cystathionine

Cysteine

Cystathionine β-sinthase

Cystathionase

THF

5-MTHF

5,10-MTHFR B12

B6

B6

Figure 1. Homocysteine metabolic pathway.

The human cystathionine beta-synthase gene is on chromosome 21, and therefore

patients with trisomy 21 have greater than normal enzyme activity and as a result lower than

normal total homocysteine [4]. Diabetic patients have decreased homocysteine values

because cystathionine beta-synthase activity is increased by the reduced levels of insulin and

by the high levels of counter regulatory hormones such as glucagon and glucocorticoids [5].

Also the enzyme 5,10-methylene-tetrahydrofolate reductase (MTHFR), which reduces

5,10-methylene-tetrahydrofolate to 5-methyl-tetrahydrofolate, may have a reduced activity

due to genetic mutations, and as a result a specific susceptibility to folic acid insufficiency,

high total plasma homocysteine levels, and an increased risk for cardiovascular events [6].

Total plasma homocysteine levels are related to sex and age: young men usually have

higher homocysteine values than women of the same age, but after fertility period this gender

difference disappears probably because the positive effect of estrogens [7] promptly goes

away with menopause; while the age-related increase of plasma homocysteine levels is

probably linked to the physiologic reduction of renal function. High homocysteine levels are

frequently detected in end-stage renal disease patients. Plasma homocysteine values rise as

renal function declines, and total homocysteine levels fall in patients after renal

transplantation [8], suggesting that renal mechanisms are at least partly responsible for the

increase of homocysteine among individuals with renal impairment [9]. High plasma

124 Marco Righetti

homocysteine levels in patients with renal failure don’t directly depend on impaired renal

excretion because, first, protein-bound form is not filtered and, second, almost all filtered free

fraction is submitted to proximal tubular reabsorption. The most apt hypothesis is the increase

of uremic toxins that may lead to impairment of enzymes related to homocysteine

metabolism. Methionine transmethylation and homocysteine remethylation are decreased in

patients with renal failure compared to healthy subjects, in contrast, whole body

homocysteine transsulfuration appears to be unaffected when corrected for variation in the

B6 vitamin status [10]. Vitamin B11, isolated from spinach leaves and called folate from the

Latin “folium” [11], is the most important determinant of plasma total homocysteine. Folate

therapy increases homocysteine remethylation and methionine transmethylation, and almost

certainly indirectly stimulates cystathionine beta-synthase [12] improving transsulfuration,

but not sufficiently to normalize homocysteine in the major part of end-stage renal disease

patients [13].

Total plasma homocysteine levels depend also on thyroid state: hypothyroidism is

associated with low and hyperthyroidism with high glomerular filtration rate, which in turn is

strictly related to plasma total homocysteine [14]. Therefore total homocysteine is decreased

in hyperthyroidism, and increased in hypothyroidism. Furthermore, in hypothyroidism

hormone replacement therapy normalizes homocysteine levels [15].

Plasma total homocysteine exists essentially as the protein-bound form, with albumin

being the main homocysteine-binding protein, and this is showed by a positive relationship

between plasma total homocysteine and serum albumin in end-stage renal disease patients.

Another important finding in these patients is the positive correlation between plasma total

homocysteine and serum creatinine, even stronger than that seen with serum albumin. This

finding may strengthen a nutritional factor of total homocysteine, but it could also be the

result of the metabolic association between total homocysteine and serum creatinine. In fact,

the formation of creatine, the precursor of creatinine, depends on methyl donation by Sadenosyl-methionine to become S-adenosyl-homocysteine, leading to the formation of

homocysteine [16]. Plasma total homocysteine may be a nutritional marker in maintenance

dialysis patients, and this nutritional feature may explain its reverse association with

mortality rate in some studies [17].

Diabetic patients on dialysis have higher homocysteine levels than diabetic patients with

normal renal function, but lower than dialysis patients with other nephropathies [18].

Many drugs may influence plasma total homocysteine levels. Methotrexate, “classical

antifolate” used in the treatment of cancer, as well as for other conditions such as rheumatoid

arthritis and psoriasis, interrupts the function of folate’s methyl transfer. Treatment protocols

with methotrexate can induce an acute state of folate depletion which may lead to significant

treatment-related toxicity. Both folate and folinic acid reduce methotrexate toxicity, and

decrease methotrexate-induced hyperhomocysteinemia. The efficacy of methotrexate

probably decreases slightly, but the benefit outweighs the risk. Folate supplementation

should, therefore, be routinely prescribed to every patient taking low-dose methotrexate [19].

Phenytoin, phenobarbital and primidone are also associated with high plasma total

homocysteine and low folate levels, whereas valproate does not influence folic acid and

homocysteine [20]. Moreover, both Parkinson’s disease patients treated with L-dopa and

asthma patients treated with theophylline show high homocysteine levels because in the first

Vitamin B Treatment and Cardiovascular Events in Hyperhomocysteinemic Patients 125

ones most likely the breakdown of L-dopa by catechol-O-methyltransferase results in

increased homocysteine formation [21], and in the second ones theophylline, a pyridoxal

kinase antagonist, causes vitamin B6 deficiency, impaired transsulfuration and therefore high

homocysteine levels [22]. Conversely estrogens lower homocysteine levels, but the

mechanism behind this observation is unclear. Estrogen-induced lowering of homocysteine

levels is probably not linked to transmethylation, remethylation, and transsulfuration

pathways, but due to a change in albumin metabolism. Furthermore, it is noteworthy to

remember that the influence of anticalcineurin drugs on homocysteine levels is controversial.

Homocysteine levels are closely related with serum creatinine both in cyclosporine and in

tacrolimus treated patients; the latter ones have lower homocysteine levels because they show

higher creatinine clearance.

Table 1 summarizes the effects of drugs and diseases on homocysteine levels.

Table 1. Drugs and diseases affecting total plasma homocysteine levels

Drugs and diseases homocysteine

Vitamin B6 ↓

Folic acid ↓

Vitamin B12 ↓

N-acetylcysteine ↓

Dialysis ↓

Diabetes ↓

Estrogen ↓

Thyroid hormone ↓

Renal dysfunction ↑

Methotrexate ↑

Trimethoprim ↑

Theophylline ↑

Fibrates ↑

Antiepileptic drugs ↑

Metformin ↑

Omeprazole ↑

Levodopa ↑

Cyclosporin ↑

Smoking ↑

Caffeine ↑

Alcohol ↑

HOMOCYSTEINE-LOWERING THERAPY

Total plasma homocysteine concentrations have a strong inverse correlation with serum

folate values. Folic acid supplementation is an effective therapy to normalize total plasma

homocysteine levels in patients with occlusive vascular disease and without renal failure [23].

126 Marco Righetti

On the contrary, high “pharmacological” doses of folate lower, but rarely normalize total

plasma homocysteine levels in patients with end-stage renal disease. We observed in a longterm randomised controlled trial [24] that about 90% of end-stage renal disease patients on

hemodialysis, treated with folic acid, have total plasma homocysteine levels higher than the

upper normal limit, and that folate treatment with 15 mg per day is not better than 5 mg per

day in lowering total plasma homocysteine levels. Folate supplementation with higher doses,

equal to 30 or 60 mg per day, is not more useful than 15 mg per day in reducing high total

plasma homocysteine levels [25]. Moreover, it has been observed that the supplementation

with folate and betaine does not further reduce total plasma homocysteine values [26],

suggestive of a betaine-dependent remethylation not stimulated by exogenous betaine when

patients are just submitted to folate therapy; and also that the homocysteine-lowering effect

of i.v. folinic acid, oral folinic acid and oral folic acid is similar [27], suggesting that high

total plasma homocysteine levels are not due to abnormal folate metabolism.

We recently detected in a 6-months prospective trial [28] that vitamin B therapy,

including folate 5 mg p.o. per day, vitamin B12 1 mg i.m. per week, and vitamin B6 300 mg

p.o. per day, largely reduces total plasma homocysteine levels, normalizing these values in

more than 70% of end-stage renal disease patient on peritoneal dialysis. We chose to add

high doses of vitamin B12 and vitamin B6 to standard folate therapy because:

1. the remethylation of homocysteine to methionine needs vitamin B12 as enzymatic

cofactor;

2. the folate supplementation reduces the dependency of homocysteine on folate with a

shift in dependency from folate to vitamin B12 [29];

3. the transsulfuration of homocysteine to cystathionine needs vitamin B6 as enzymatic

cofactor; and

4. vitamin B6 deficiency, usually found in dialysis patients, contributes to impaired

transsulfuration.

The literature’s data tell us that there are no known severe side effects concerning folate

therapy; and, furthermore, the upper level of 1 mg per day of folic acid recommended dose

[30] is due to the possible risk of concealing anemia in the case of vitamin B12 deficiency.

Also for vitamin B12 supplementation, there are no known side effects, and apparently

neither upper limits of intake. Vitamin B6 is important, when added to vitamin B12 and

folate, to reduce hyperhomocysteinemia; but single high doses of vitamin B6 are

unsuccessful to lower high total plasma homocysteine levels. Moreover, contrary to folate

and vitamin B12, there is a safe upper limit for long-term vitamin B6 supplementation that is

equal to 50-100 mg per day. Table 2 shows the different doses of vitamin B therapy in the

homocysteine-lowering trials with a long-term follow-up period.

Total plasma homocysteine concentrations of end-stage renal disease patients may be

also improved with dialysis therapy. The standard low-flux bicarbonate dialysis removes

about 30% of the pre-dialysis total plasma homocysteine concentration and, as expected,

homocysteine reduction rate during this type of hemodialysis is lower than that of creatinine,

according to its protein binding. Total plasma homocysteine levels do not rise for at least 8

hours after standard low-flux dialysis in contrast to plasma creatinine concentration [31], and

Vitamin B Treatment and Cardiovascular Events in Hyperhomocysteinemic Patients 127

plasma homocysteine levels have a postdialytic slight decrease, considering patients on high

flux dialysis [32]. This interdialytic homocysteine curve is fitting with the thinking that

dialysis treatment may remove uraemic toxins with inhibitory activities against one or more

enzymes of the remethylation or transsulphuration pathway. The high-flux dialysis membrane

should perform this removal with greater efficiency. High-flux dialysers with high capacity to

eliminate large uraemic substances, but without excessive leakage of useful proteins such as

albumin, show an intradialytic higher homocysteine-lowering rate, about 40% compared to

30% with low-flux membrane, and pre-dialysis total plasma homocysteine values are slightly,

but not significantly, lower in end-stage renal disease patients treated with high-flux

membranes as compared to patients submitted to low flux dialysers during a follow-up time

of 3 months [33]. The high-flux advanced polysulphone dialysers with high clearance of

larger uraemic toxins, but non-albumin-leaking, do not improve homocysteine clearance

compared to high-flux standard polysulphone membranes, confirming that the large part of

uraemic toxins affecting homocysteine metabolism are protein-bound or have a molecular

weight above 15000 Daltons [34]. The super-flux, albumin-leaking, dialysers improve predialysis total plasma homocysteine values as compared to both low and high-flux membranes,

mainly by removing large molecular weight solutes able to affect the homocysteine

metabolism [35,36,37]. Also the hemodiafiltration with endogenous reinfusion and the

internal hemodiafiltration have high homocysteine-lowering power [38] similar to superflux

membranes. End-stage renal disease patients submitted to pre-dilution on-line hemofiltration

[39], nocturnal hemodialysis six or seven nights per week [40], and peritoneal dialysis

[41,28] show a significantly lower pre-dialysis total plasma homocysteine levels as compared

to patients on standard low-flux hemodialysis, because the first removes larger molecular

weight solutes, and the others have a shorter interdialytic period which permits a less

restricted diet. Indeed, total plasma homocysteine concentrations are not efficiently decreased

by peritoneal dialysis because its dialytic removal via the peritoneal membrane is inefficient

owing to its high protein-bound fraction [42] and, therefore, the reason of lower total plasma

homocysteine levels in end-stage renal disease patients on peritoneal dialysis as compared to

patients on standard hemodialysis is in theory due to the continuous treatment which gives

the chance to the patients having a diet with more fruit and vegetable.

Table 2. Vitamin B doses, net changes of homocysteine from baseline levels, and relative

risk for stroke in the long-term homocysteine-lowering trials

Journal First Author B6 Folate B12 Δ homocysteine RR Stroke

Blood Purif Righetti M [58] 5mg -15.1 0.55

JACC Zoungas S [74] 15mg -2.4 0.45

N Engl J Med HOPE-2 Inv. [69] 50mg 2.5mg 1mg -3.2 0.76

N Engl J Med Bǿnaa KH [68] 40mg 0.8mg 0.4mg -3.8 0.91

JAMA Toole JF [66] 25mg 2.5mg 0.4mg -2.1 1.04

End-stage renal disease patients on maintenance haemodialyis, submitted to intravenous

N-acetylcysteine, showed post-dialysis lower plasma homocysteine levels and better pulse

pressure values as compared with untreated haemodialysis patients [43,44]. Scholze A et al.

[43] demonstrated not only that patients submitted to 5 g acetylcysteine in 5% glucose

128 Marco Righetti

solution for 4 hours during a single haemodialysis session had total plasma homocysteine

levels markedly reduced (about 90%, with post-dialysis homocysteine values equal to 2

micromoles/liter) beyond the effects of haemodialysis alone; but also they observed an

improvement of endothelial function. The high homocysteine-lowering effect of intravenous

acetylcysteine is probably due to a quick displacement of homocysteine from protein-binding

sites, allowing an increased rate of homocysteine available for clearance by haemodialysis,

considering its small size. On the contrary, oral administration of acetylcysteine showed only

a 20% of homocysteine-lowering as compared to no homocysteine-reduction in the placebo

group [45]; and, unfortunately, a randomised controlled trial by Tepel M et al. [46] showing a

significant lowering of composite cardiovascular end-points in haemodialysis patients

submitted to acetylcysteine, 600 mg BID orally, did not analyze the effects on plasma

homocysteine.

A recent paper [47] has shown preliminary data concerning the action of mesna, a thiolcontaining drug analogue of taurine used to protect the bladder wall from haematuria and

haemorrhagic cystitis caused by cyclofosfamide and other cancer-fighting drugs, on total

plasma homocysteine levels in hemodialysis patients. The intra-dialytic mesna

supplementation at the dose of 5 mg per Kg caused, lowering homocysteine’s protein-bound

fraction, a higher decrease (about 55%) of total plasma homocysteine levels as compared to

hemodialysis alone (about 35%). Table 3 summarizes homocysteine-lowering treatments.

Table 3. Homocysteine-lowering treatments in end-stage renal disease patients

First Author Rx Result

Righetti M [24] 5mg FA 5mg FA is similar to 15mg, only about 10% of pts with

final normal homocysteine values

Righetti M [28] 5mg FA, 250mg B6,

500mg B12

Multivitamin B therapy is better than FA alone, about

70% of pts with final normal homocysteine values

Righetti M [38] HDF High intra-dialytic homocysteine-lowering rate, about

40-50%, in pts on I-HDF, OL-HDF, HFR; better than

30% in pts on standard thrice weekly HD

Moustapha A [41] PD Homocysteine levels are lower in pts on PD as compared

with pts on thrice weekly HD

Friedman AN [40] Every-day HD Homocysteine levels are lower in pts on every-day HD

as compared with pts on thrice weekly HD

Scholze A [43] N-acetylcysteine IV N-acetylcysteine therapy improves intra-dialytic

homocysteine-reduction rate

HOMOCYSTEINE TOXIC EFFECT

High total plasma homocysteine values cause endothelial damages through several

mechanisms, usually not exclusive [48]. Homocysteine can change the release or activity of

anti-inflammatory, vasoactive agents like adenosine and nitric oxide. High homocysteine

levels are linked to impaired vasodilation and decreased nitric oxide production by

endothelial nitric oxide synthase, due both to arginine transport alterations that reduce

Vitamin B Treatment and Cardiovascular Events in Hyperhomocysteinemic Patients 129

cellular uptake of L-arginine and to the increase of asymmetric dimethylarginine, an

endogenous inhibitor of nitric oxide synthase, with consequent rise of superoxide anion

production.

 


the quinonoid intermediate from the opposite side of the PLP-ring. By site-directed

mutagenesis, kinetic and computational studies, it has been demonstrated that alanine

racemase catalyzes the racemization by a two-base mechanism in which Tyr 265 is the base

abstracting the Cα-proton from L-alanine while Lys 39 is the base abstracting the Cα-proton

from D-alanine [20-23]. Evidence has been also provided that alanine racemase catalyzes the

transamination of both enantiomers of alanine as a side reaction and that: 1) the α-hydrogen

of L-alanine is transferred suprafacially to the C4’ of PLP by Tyr 265; 2) Lys 39 plays the

role of a counterpart for Tyr 265 and is specific for D-alanine [24]. It should be noted that

alanine racemase, together with PLP-dependent amino acid racemases of broad substrate

specificity [25], represents the first class of PLP-enzymes catalyzing the hydrogen removal

on both sides of the plane of a substrate-cofactor complex during transamination.

Figure 8. Comparison of the arrangement of potential acid-base catalysts in the active sites of cystalysin

and alanine racemase. The complex between alanine racemase and alanine phosphonate (PDB 1BD0;

represented as green sticks), and the complex between cystalysin and aminoethoxyvynilglycine (PDB

1C7O; represented as yellow sticks) are shown. Oxygen atoms are colored orange, nitrogen atoms black

and phosphorus atoms red .The position of the water molecule W733H is also shown. Figure was

obtained using pyMol software.

The structural similarities between cystalysin and alanine racemase led to analyze the

interaction of cystalysin with alanine, a compound which does not contain a suitable leaving

group and cannot be substrate of an α,β-elimination reaction.

As reported in Table 2, cystalysin is able to catalyze the racemization of both

enantiomers of alanine [26]. Considering that racemization is a side reaction for the enzyme,

it takes place with a remarkable kcat value (about 1 s-1), which is only about 10-fold lower

than that of the main reaction at the same pH. This raises the question of a possible

110 Barbara Cellini, Riccardo Montioli and Carla Borri Voltattorni

physiological meaning for T.denticola in the synthesis of the bacterial cell walls. However,

considering the high Km for alanine, it cannot be excluded that the racemase activity could be

a mere corollary of the chemical properties of the enzyme. Spectroscopic analyses of the

interaction of cystalysin with L-and D-alanine have indicated that, along with the racemase

activity, the enzyme catalyzes the half-transamination of both enantiomers of alanine with

turnover times measured in minutes (Table 2). Moreover, apo-cystalysin, in the presence of

PMP, catalyzes the reverse transamination of pyruvate. Thus cystalysin is able to perform

transamination in both direction: from PLP to PMP and from PMP to PLP [26].

Table 2. Steady-state kinetic parameters for the alanine racemase and transaminase

catalytic activities in 20 mM potassium phosphate buffer pH 7.4 at 25°C

 L-alanine D-alanine

Racemization

kcat (s-1) 1.05 ± 0.03 1.4 ± 0.1

Km (mM) 10 ± 1 10 ± 1

kcat/ Km (mM -1s

-1) 0.10 ± 0.01 0.14 ± 0.02

Transamination

10-4 x kcat (s-1) 4.50 ± 0.05 1.0 ± 0.1

Km (mM) 8.5 ± 0.5 9.9 ± 0.5

10-5 x kcat/ Km (mM -1s

-1) 5.3 ± 0.3 1.0 ± 0.1

H C

NH+

K238

+ L-alanine HC

NH+

C

H

CH3

COOHC

H NH+ +

C

COO- CH3

HC

NH+

C

H

CH3

COOH+

H+

H C

NH+

K238

+ D-alanine

I II III IV

C4' H+

C4' H+

V

Cα H+

H2C

NH+

C

COO- CH3

pyruvate

H2O

VI

H2C

NH2

pyruvate

H2O

VII

Figure 9. Proposed reaction mechanism for the racemization and transamination of alanine catalyzed by

cystalysin.

Cystalysin: An Example of the Catalytic Versatility… 111

A

B

Figure 10. Modelling of the binding modes of L- and D-alanine at the active site of cystalysin. Activesite view of the energy-minimized model for cystalysin with (A) L-alanine or (B) D-alanine bound. The

alanine-PLP conjugates are represented as green sticks. Oxygen atoms are coloured red, nitrogen atoms

blue and phosphorus purple. Hydrogen bonds are shown in cyan. The * denotes a residue that belongs

to the neighbouring subunit. This Figure was obtained using pyMOL.

According to a generally accepted mechanism, it has been postulated that the

racemization of alanine catalyzed by cystalysin proceeds as follows (Figure 9): (i)

transaldimination between Lys 238 bound with PLP (I) and the α-amino group of alanine to

produce the external aldimine II; (ii) abstraction of the α-hydrogen from alanine to produce a

resonance-stabilized quinonoid intermediate (III); (iii) reprotonation at the α-carbon of the

quinonoid intermediate III on the side opposite to that where the α-hydrogen was abstracted;

(IV) second transaldimination between IV and Lys 238 to release the product enantiomer of

112 Barbara Cellini, Riccardo Montioli and Carla Borri Voltattorni

alanine (V). In this mechanism racemization and transamination of alanine share the step

leading to the quinonoid intermediate. When an half-transamination occurs, the C4’ position

of the cofactor moiety is reprotonated, thus generating the pyruvate-PMP ketimine

intermediate (VI). The hydrolysis of the intermediate VI leads to the formation of PMP and

pyruvate (VII) [22].

Interestingly, it has been demonstrated that in the reverse transamination of pyruvate

catalyzed by cystalysin, the cleavage of the C-H bond at C4’ of PMP and the reprotonation of

the α-carbon of the anionic intermediate take place in a non-stereospecific manner. This is

similar to what has been observed with alanine racemase. However cystalysin is the first

example of a non-stereospecific hydrogen abstraction by an enzyme belonging to the αfamily of PLP-enzymes [25].

Molecular modeling studies have been undertaken in order to rationalize the

experimental data and identify possible acid-base catalysts involved in the two-base

racemization mechanism. The putative binding modes of L- and D-alanine at the active site

of cystalysin are shown in Figure 10A and 10B, respectively. The inspection of the model

have indicated that for both substrates, according to the Dunathan hypothesis, the leaving

group is antiperiplanar to the aromatic moiety of PLP. For L-alanine, the structure has

revealed that Lys 238 is located close to the Cα-hydrogen of the substrate and to the C4’ of

the cofactor. Thus this residue seems to have the proper orientation to act as a catalytic base

on the si face of PLP. For D-alanine, two tyrosines (Tyr 123 and Tyr124) and a water

molecule (W733H) lie on the re side of the PLP cofactor. Tyr 124 is to far from the αhydrogen of the substrate to act as an acid-base catalyst, while Tyr123, co-planar with the

PLP ring, is placed in a proper position to act as a catalyst. However, it should rotate out from

its hydrophobic environment for the proton abstraction. Also a water molecule, held in place

by Tyr 123 and, to a lesser extent, by Tyr124, could bridge this gap for proton abstraction,

acting as a general acid-base catalyst [26].

Site-directed mutagenesis studies have been employed to gain insight into the mechanism

of racemization and transamination of both enantiomers of alanine catalyzed by cystalysin.

As a first step, Lys 238 and Tyr 123 were selected as target for mutagenesis, and the

functional properties of the active-site mutants K238A and Y123F were analyzed to probe the

hypothetical role of the mutated residues in racemase and transaminase activities.

The K238A mutant neither shows detectable racemase activity in both directions, nor

catalyzes the transamination of L-alanine thus indicating that Lys 238 is the base located on

the si face of PLP specifically abstracting the α-hydrogen from L-alanine [27]. It can be

observed that this residue plays in the racemization the same role that has been already

proposed for it in the α,β-elimination reaction [18]. In addition, it has been found that K238A

catalyzes the overall transamination of D-alanine. This strongly suggests that on the re face

of PLP is located an acid-base catalyst whose role in the forward reaction is proton

abstraction from the D-alanine-PLP external aldimine complex and reprotonation at the C4’

of the generated carbanionic intermediate to give pyruvate and PMP (Figure 9 V-IV-III-VIVII). In the reverse reaction, the role of the same catalyst is to transfer a proton from C4’ of

the pyruvate-PMP ketimine intermediate to the Cα of the quinonoid to regenerate D-alanine.

On the basis of molecular modeling studies, the possibility that Tyr 123 is the acid-base

catalyst located on the re face of PLP has been checked. However, Y123F mutant retains

Cystalysin: An Example of the Catalytic Versatility… 113

poor racemase and transaminase activities, thus suggesting that Tyr 123 is not essential for

catalysis. The possibility that the catalytic function of Tyr 123 is replaced by Tyr 124 in the

Y123F mutant has been excluded by the spectral and kinetic characterization of the

Y123F/Y124F mutant. In fact, the catalytic efficiencies of the racemization and

transamination reactions are weakly altered in the double mutant with respect to the single

mutant [27]. On this basis, it has been hypothesized that the water molecule held in place by

Tyr 123 and Tyr 124 may function as the acid-base catalyst on the re face of the cofactor.

Following this view, the reduction of the racemase activity of Y123F has been ascribed to the

mispositioning of the water molecule upon the mutation of tyrosine 123 to phenylalanine, as

confirmed by molecular modelling. A second hypothesis advanced is that Tyr 123 could have

a direct role in proton abstraction/donation being its function replaced by the water molecule

in the Y123F mutant. Available data did not allow to unequivocally identify the acid-base

catalysts on the re face of PLP in cystalysin; it has only been proposed that water molecules

and their hydrogen bond interactions with Tyr 123 are required for an efficient proton

abstraction/donation [27]. Nevertheless, cystalysin represents the first example of a PLPdependent enzyme belonging to Fold Type I for which a two-base racemization mechanism

has been demonstrated.

β-DESULFINATION AND β-DECARBOXYLATION CATALYZED

BY CYSTALYSIN

When the interaction of cystalysin with L-cysteine sulfinic acid and L-aspartic acid was

studied, it was found that the enzyme does not catalyze the α,β-elimination of these ligands.

However, both L-cysteine sulfinic acid and L-aspartic acid induce time-dependent changes in

the protein-bound coenzyme which strongly suggest an active-site directed event and thus the

occurrence of a reaction between cystalysin and each of these ligands [28]. Unexpectedly, it

was found that cystalysin catalyzes the β-desulfination of L-cysteine sulfinic acid and the βdecarboxylation of L-aspartic acid. Both reactions lead to the production of alanine, with the

amount of L-alanine far exceeding that of the D-alanine. The kinetic parameters for these

catalytic activities, reported in Table 3, reveal that both reactions take place with high

turnover numbers. In particular, the kcat value for the β-desulfination reaction is about 2-3

fold higher than the kcat value of the main reaction of cystalysin (the α,β-elimination of Lcysteine). However, due to the high Km values for L-cysteine sulfinic acid and L-aspartate,

the catalytic efficiency of β-desulfination and β-decarboxylation is lower than that of the α,βelimination reaction. Therefore, a possible physiological role of these catalytic activities for

T.denticola may be excluded.

114 Barbara Cellini, Riccardo Montioli and Carla Borri Voltattorni

Table 3. Kinetic parameters for the β-desulfination of L-cysteine sulfinic acid and the βdecarboxylation of L-aspartic acid and oxalacetate catalyzed by cystalysin in 20 mM

potassium phosphate buffer pH 7.4 at 25°C

 L-cysteine sulfinic acid L-aspartate Oxalacetate

kcat (s-1) 89 ± 7 0.8 ± 0.1 0.15 ± 0.01

Km (mM) 49 ± 9 280 ± 70 13 ± 2

kcat/ Km(mM-1s

-1) 1.8 ± 0.3 0.0028 ± 0.0008 0.011 ± 0.002

Furthermore, during the reaction of cystalysin with both L-cysteine sulfinic acid and Laspartate, a time-dependent inactivation of the enzyme takes place with a concomitant

gradual conversion of PLP bound to PMP. This event is due to a half-transamination reaction,

which occurs at a lower rate with respect to the rate of cleavage of the β-substituent for both

L-amino acids [28].

N

+

N

+

N

+

N

+

H

HC

N+ H

K238

H

COONH3

+

H

HC

HN+

K238

CH COO-

:NH2

R

CH2

R

R

H

HC

HN+

CH COOCH3

Transamination

Racemization

half-transamination

H

CH2

NH2

COOCH2

R

C

O

+

I II

III

-

-

-

Figure 11. Reaction mechanism for β-desulfination and β-decarboxylation reactions catalyzed by

cystalysin.

Cystalysin: An Example of the Catalytic Versatility… 115

On the basis of all the results, the reaction of cystalysin with L-cysteine sulfinic acid and

L-aspartic acid has been interpreted according to the mechanism depicted in Figure 11. After

a first transaldimination step (IÆII), a Cβ-R-

 cleavage occurs where the negatively charged

side chains of L-cysteine sulfinic acid and L-aspartic acid are eliminated without

deprotonation at Cα. Thus, the electrophilic displacement of the negatively charged

substituent at Cβ is not in the main pathway of the α,β-elimination catalyzed by cystalysin.

The Cβ-R-

 cleavage leads to the formation of the L-alanine aldimine complex (III), which can

undergo either a racemization or a transamination reaction. On the basis of the proposed

mechanism, PMP formation could be due to a half-transamination which can occur either

from the substrate-aldimine complex (II), or from the alanine-aldimine complex (III). The

comparison between the rate of transamination of L-cysteine sulfinic acid with that of

alanine, has provided evidence that the formation of PMP is due to the direct transamination

of L-cysteine sulfinic acid. On the other hand, during the reaction of cystalysin with Laspartate, PMP is generated by the transamination of both the substrate and the alanine

formed by β-decarboxylation [28].

It has been reported that also E.coli aspartate aminotransferase catalyzes the βdesulfination of L-cysteine sulfinic acid and the β-decarboxylation of L-aspartic acid as sidereactions. However, the kcat value of these reactions for aspartate aminotransferase is about

1500-fold lower than that of cystalysin [29]. Notably, E.coli aspartate aminotransferase

belongs to the aminotransferases subgroup Ia which includes enzymes that undergo a large

conformational change from an open to a closed form upon substrate binding [30]. It has

been reported that enzymic forms with enhanced β-desulfinase and β-decarboxylase activities

result from mutations that prevent the transition to the closed conformation. Cystalysin

belongs to the aminotransferases subgroup Ib, which are unable to undergo that

conformational change. Indeed, the complex of cystalysin with the inhibitor

aminoethoxyvinylglycine [14] does not reveal any large conformational change with respect

to the enzyme in the internal aldimine form. Thus, it has been suggested that the absence of a

ligand-induced closure of the active site in cystalysin could be at least partially responsible

for the high catalytic versatility of the enzyme by favoring the possibility of side-reactions to

occur.

It is noteworthy that among PLP-dependent enzymes able to perform β-displacement

reactions, also some Cβ-Sγ lyases, such as NifS and NifS-like proteins, catalyze the

electrophilic displacement of the substituent at Cβ of L-cysteine, L-selenocysteine or Lcysteine sulfinic acid to yield L-alanine. However, cystalysin represents the first example of a

lyase able to perform both a desulfhydrase and a desulfinase reaction.

An additional and even more unexpected result is the finding that cystalysin in the PMP

form catalyzes the β-decarboxylation of oxalacetate. In fact, when the apoenzyme in the

presence of PMP was allowed to react with oxalacetate, a gradual conversion of PMP into

PLP was observed. These data were indicative of a reverse half-transamination reaction,

which would convert oxalacetate into aspartate and PMP into PLP. However, no formation of

aspartate was found in the reaction mixture. Unexpectedly, the reaction of the PMP form of

cystalysin with oxalacetate leads to the production of pyruvate, thus indicating that

oxalacetate undergoes a PMP-dependent β-decarboxylation. The kinetic parameters of this

reaction are reported in Table 3. Thus, the PMP to PLP conversion observed during the

116 Barbara Cellini, Riccardo Montioli and Carla Borri Voltattorni

reaction of cystalysin with oxalacetate is due to the reverse transamination of pyruvate

generated by β-decarboxylation, rather than to the direct half-transamination of oxalacetate.

From a mechanicistic point of view, it can be postulated that the binding of oxalacetate to

the active site of cystalysin in the PMP form generates a ketimine intermediate which is

potentially susceptible to β-decarboxylation because the imine bond is in β-position with

respect to the carboxylate group. The decarboxylation step leads to the formation of the

pyruvate ketimine intermediate which can either be hydrolyzed to pyruvate and PMP, or

undergo a half-transamination reaction with the production of alanine and PLP (Figure 12).

N

+

N

+

N

+ N

+

N

+

half-transamination

H

CH2

NH2

COOCH3

C

O

+

H

CH2

NH2

COOCH2

C

O

+

H

CH2

NH+

C COOCH2

H

CH2

NH+

C COOCH3

hydrolysis

COOCH3

CH +

NH3

+

PLP alanine PMP pyruvate

ketimine intermediate pyruvate ketimine

H2O

H2O

H

HC

N+ H

K238

COOCOOCO2

PMP oxalacetate

Figure 12. Proposed mechanism for the β-decaboxylation of oxalacetate catalyzed by cystalysin.

The quite large turnover number which characterizes the β-decarboxylase activity of the

PMP-form of cystalysin, has lead to propose a possible physiological role of this reaction for

Treponema denticola. A recent study [31] indicates that glutathione metabolism plays a role

in nutrition and potential virulence expression of Treponema denticola. Indeed, it has been

found that pyruvate, one of the end products of glutathione metabolism, promotes bacterial

growth. In addition, it should be taken into account that some anaerobic bacteria are able to

grow using the decarboxylation of saturated dicarboxylic acids as the only source of energy

Cystalysin: An Example of the Catalytic Versatility… 117

[32]. Several biochemical studies on fermenting bacteria suggest that two different

mechanisms exist for the synthesis of adenosine triphosphate (ATP). In one case, the

decarboxylation energy is directly converted into a Na+ ions electrochemical gradient across

the plasma membrane; in a second case, an electrochemical gradient is generated by the

association between an electrogenic dicarboxylate/monocarboxylate antiporter and a soluble

decarboxylase. Notably, all the soluble decarboxylases identified so far require thiamine

pyrophosphate as a cofactor [33-35]. Thus, the PMP form of cystalysin endowed with a βdecarboxylase catalytic activity would represent the first example of a soluble decarboxylase

requiring PMP as coenzyme.

CONCLUSION

The study of the reaction specificity of cystalysin have highlighted the high catalytic

versatility of this enzyme. This makes cystalysin a useful model of the wide catalytic

potential of PLP-dependent proteins and a suitable model to understand the relationship

between structure and function in this family of enzymes.

 



Figure 2. Overall structure of the cystalysin dimer. One monomer is blue whereas the other is red. PLP

is shown in ball-and-stick representation. The picture was drawn with PyMol (ver, 0.98-2005 DeLano

Scientific LLC) using PDB entry 1C7N.

The analysis of the spectral properties of recombinant cystalysin reveals that the native

enzyme exhibits two absorption bands in the visible region at 418 and 320 nm, whose

intensity is dependent on pH (Figure 3). Titration of enzyme-bound coenzyme in the pH

range 5.9-9.7 is consistent with a single deprotonation event with a pK value of about 8.4.

However, the absorbance spectra do not show the complete conversion of the 418 nm band

into the 320 nm band, thus suggesting the involvement of multiple species. On the basis of

their fluorescence properties, the 418 nm band, predominating at low pH, has been attributed

Cystalysin: An Example of the Catalytic Versatility… 103

to the internal Schiff base in the ketoenamine form, while the 320 nm band, predominating at

high pH, has been attributed to a substituted aldamine which forms upon addition of a

deprotonated nucleophile or a hydroxyl group to the imine double bond [15]. Altogether, the

spectral changes of cystalysin as a function of pH have been interpreted according to the

model shown in Figure 4. It involves the interconversion between XH-I and X-

-III

ketoenamine forms absorbing at 418 nm and protonated (II) and unprotonated (IV)

substituted aldamine forms absorbing at 320 nm. At low pH (pH<8.4) I and II are present,

while at high pH (pH>8.4) III and IV are present. XH is the group performing the

nucleophilic attack on the C4’ of the internal aldimine and its deprotonated X- form is the

more favorable for forming the adduct. Site-directed mutagenesis experiments strongly

support the view that this group is Tyr 64, a residue of the neighboring subunit hydrogenbonded to the phosphate ester of PLP (see below) [16]. The two equilibria between I and II as

well as between III and IV are governed by the aldamine formation. Instead, the equilibrium

between I and III and that between II and IV are governed by a deprotonation/protonation

event. Accordingly, the spectral pK of 8.4 would reflect the ionization of the XH group

whose ionization influence the equilibrium between the species absorbing at 418 and 320 nm.

400 500

0.4

0.8

300

Wavelenght(nm)

Absorba

nce

Figure 3. Absorbance spectra of 50 µM cystalysin in 20 mM Bis-Tris propane at pH 5.9 (⎯) and pH

9.4 (······).

α,β-ELIMINATION IS THE MAIN REACTION OF CYSTALYSIN

Cystalysin is structurally similar to other enzymes catalyzing PLP-dependent α,βelimination reactions and belongs to the group of Cβ-Sγ lyases that produce ammonium and

pyruvate [17]. This allows to outline the catalytic mechanism for the desulphydrase reaction

shown in Figure 5. Upon binding of the substrate L-cysteine, the Michaelis complex I is

rapidly converted to the external aldimine II. Then, the abstraction of the Cα-proton of the

substrate produces a carbanionic intermediate that is stabilized as the characteristic quinonoid

intermediate (III) and the subsequent elimination of H2S generates the PLP derivative of the

aminoacrylate (IV). Finally, a reverse transaldimination takes place forming iminopropionate

104 Barbara Cellini, Riccardo Montioli and Carla Borri Voltattorni

and regenerating the internal aldimine. The reaction end product iminoproprionate is released

and hydrolyzed to pyruvate and ammonia outside the active site [14].

PLP

CH

NH+

K238

XH

PLP

CH

X

K238

NH

PLP

CH

X HNH+

K238

PLP

CH

NH+

K238

XI (418nm)

III (418nm) IV (320nm)

II (320nm)

increasing pH

Figure 4. Structures of the coenzyme form in cystalysin as a function of pH.

Table 1. Kinetic parameters for the α,β-elimination of various substrates catalyzed by

cystalysin in 20 mM potassium phosphate buffer pH 7.4 at 25°C

kcat (s-1) Km (mM) kcat/ Km (mM-1s

-1)

L-cysteine 11.4 ± 0.3 0.63 ± 0.11 18 ± 3

L-cystathionine 13.03 ± 0.7 1.38 ± 0.2 9.4 ± 1.4

L-cystinea 21.1 ± 0.3 0.68 ± 0.05 31 ± 2

L-djenkolic acid 72.2 ± 6.7 0.99 ± 0.15 73 ± 13

L-serine 0.36 ± 0.02 6.92 ± 1.15 0.052 ± 0.009

Β-chloro-L-alanine 59.9 ± 2.3 1.21 ± 0.15 50 ± 6

O-acetyl-L-serine 63.3 ± 3.0 1.6 ± 0.2 40 ± 5 a

 measured at pH 8.4

The study of the reaction of cystalysin with various sulfur- and non-sulfur-containing

amino acids, as well as with disulfidic amino acids, has shown the relatively broad substrate

specificity of cystalysin. Structural elements of the substrate molecule playing a critical role

in the catalytic efficiency of cystalysin-catalyzed α,β-elimination are a second cysteinyl

moiety (not necessarily a disulfide) or a good leaving group (not necessarily in a sulfurcontaining compound). Indeed, the catalytic efficiency toward L-cystine or β-chloro-Lalanine is higher than that toward L-cysteine [15] (Table 1). Therefore, cystalysin does not

Cystalysin: An Example of the Catalytic Versatility… 105

seem to be a cysteine desulphydrase, as previously claimed [11], but should more properly be

considered as a cyst(e)ine C-S lyase.

N

+

N

+

N N

+

H

+

N

+

H

HC

N+ H

K238

Cα SH

H

COONH3

+

H

HC

HN+

K238

SH Cα

H

COOH

HC

H N+

Cα SH

COO-

: H

HC

COOHN+

C

H2S

H2

K238

NH3

+

H

HC

N+H

K238

CH3 C COOH2O

CH C COO- 3 NH3

O

:

+

K238

NH2 :

NH2

+

 I

Michaelis Complex

 II

External aldimine

 III

Quininoid intermediate

 IV

Aminoacrylate

Iminopropionate

Internal aldimine

NH2

Pyruvate

Figure 5. Catalytic mechanism for the α,β-elimination of L-cysteine catalyzed by cystalysin.

Several reaction intermediates of the α,β-elimination reaction catalyzed by cystalysin

have been identified by studying the interaction of the enzyme with both substrates or

substrate analogs. Among the substrates, the interaction of cystalysin with L-serine, analyzed

by conventional spectroscopy, allows only the detection of a band absorbing at 429 nm

attributed to the external aldimine (Figure 6A). Likewise, the interaction of the enzyme with

β-chloro-L-alanine, studied by UV-vis stopped-flow spectroscopy, leads to the formation of a

band absorbing at 330 nm which has been attributed to an external aldimine in the enolimine

form (Figure 6B). Other reaction intermediates have not been identified so far in the catalytic

pathway of wild-type cystalysin. Although substrate analogs, glycine, L-methionine and Lhomoserine have been found to bind to cystalysin in an unproductive mode, they interact with

the enzyme in different ways: while glycine forms an external aldimine, L-methionine and Lhomoserine give equilibrating mixtures of external aldimine and quinonoid species (Figure

106 Barbara Cellini, Riccardo Montioli and Carla Borri Voltattorni

6C). This implies that glycine stops the reaction at the step of external aldimine, whereas Lmethionine and L-homoserine stop the reaction at the level of quinonoid intermediate. It has

been suggested that glycine, due to the absence of side-chain carbon atoms, could be unable

to maintain the scissile bond parallel to the aldimine p orbitals, thus preventing the

subsequent hydrogen abstraction [15].

0.1

0.08

Absorbance

Wavelength[nm]

0

0.06

0.02

0.04

300 550 400 500

Enzyme + L-serine A

300 350 400 450 500 550

0.00

0.02

0.04

0.06

0.08

B

Absorbance

Wavelength (nm)

Enzime

+ Glycine

+ L-Homoserine

+ L-methionine

0

0.05

0.1

300 400 500 550

Absorbance

Wavelength[nm]

C

Figure 6. Spectroscopic features of the interaction of cystalysin with differents substrates and substrates

analogs. (A) Absorption spectra of 6.5 µM cystalysin (⎯) and immediately after addiction of 100 mM

L-serine (---). (B) Rapid scanning stopped-flow spectra of 5 µM cystalysin (- - -) and 0.03 s after the

addition of 10 mM β-chloro-L-alanine (⎯). (C) Absorption spectra of 7 µM cystalysin (⎯), and in the

presence of 20 mM glycine(----), 494 mM L-homoserine (······) and 204 mM L-methionine (- · -). In

each case the buffer was 20 mM potassium phosphate pH 7.4.

Cystalysin: An Example of the Catalytic Versatility… 107

Extensive investigations recently undertaken on the kinetic features of cystalysin have

allowed the identification of residues involved in catalysis and have provided new insights on

the catalytic mechanism of the enzyme.

The pH-profiles for the kinetic parameters of the α,β-elimination together with the pHdependence of quinonoid absorbance titration have indicated that: i) a single ionizing group

with a pK of 6-6.4 is involved in catalysis and must be unprotonated to achieve maximum

catalytic efficiency. This pK has been tentatively associated to the ionization of the PLPbinding Lys 238 which could be responsible for the abstraction of the α-proton of the

substrate [16]; ii) a group with a pK of ~8 affects the kcat of the reaction and must be

unprotonated to achieve maximum velocity. However, as the kcat differs by a factor of only 4-

5 at low and high pH, it was suggested that this group influences the chemistry of the reaction

even if it is not directly involved in catalysis. As proposed, this pK may reflect either the

ionization of the coenzyme phosphate group or the ionization of an unknown group which

induces a conformational change resulting in the conversion from a less to a more

catalitically competent conformation.

Site-directed mutagenesis studies have indicated that Lys 238, the residue which forms

the internal aldimine, is essential for the α,β-elimination reaction catalyzed by cystalysin. In

particular, mutant enzymes in which Lys 238 has been replaced by alanine (K238A) or

arginine (K238R) are characterized by a lower affinity for the coenzyme with respect to wildtype cystalysin. Furthermore, in comparison with wild-type cystalysin, the rate of formation

and decay of the Schiff base species has been significantly decreased in the mutants K238A

and K238R. Kinetic studies indicate that K238A mutant is inactive in the α,β-elimination

reaction, while the K238R retains poor eliminase activity. In addition, the analysis of the

reaction of Lys 238-mutants with L-methionine and L-homoserine shows that mutation of the

active site lysine to arginine does not prevent the Cα-hydrogen abstraction leading to the

quinonoid intermediate. On the other hand, mutation of Lys 238 to alanine seems to block the

reaction at the step of the external aldimine. All together, these results led to the proposal that

Lys 238 in cystalysin fulfills a triple role: it strengthens the PLP binding; it enhances the

formation and dissociation of the enzyme and ligand Schiff bases, allowing an easier

transaldimination; it might also have an essential catalytic role, possibly participating in the

reaction as a general base abstracting the Cα-proton from the substrate, and a general acid

protonating the β-leaving group [18].

Numerous insights on the kinetic features of cystalysin have been obtained by studying

the functional properties of a cystalysin mutant in which Tyr 64, the residue hydrogenbonded to the PLP-phosphate involved in the formation of the substituted aldamine, has been

changed to alanine. The results indicate that Tyr 64 plays a role in cofactor binding but is not

essential for catalysis, as its mutation results in only about 90% reduction in the kcat and

kcat/Km values with respect to wild-type. However, stopped-flow analyses of the interaction of

the Y64A mutant with the substrate β-chloro-L-alanine allow the detection of the αaminoacrylate species. This result substantiates the presence during α,β-elimination catalyzed

by cystalysin of this intermediate, which has not been detected during the reaction of wildtype enzyme with substrates so far examined. Accordingly, stopped-flow kinetic analyses and

rapid chemical quench studies demonstrate that Tyr64 mutation changes the rate-limiting step

of the α,β-elimination reaction. In fact, α-aminoacrylate formation is rate-determining in the

108 Barbara Cellini, Riccardo Montioli and Carla Borri Voltattorni

mutant while the rate-limiting step in the α,β-elimination catalyzed by wild-type cystalysin is

most probably associated to product release. On the basis of structural data it has been

proposed that Tyr64 during the catalytic cycle could act by correctly positioning the Lys 238

ε-amino group toward the leaving group to facilitate catalysis [16]. The recent insights on the

proposed α,β-elimination reaction mechanism catalyzed by cystalysin are highlighted in

Figure 7.

N+

H N N

PO

O

O-

-

O

HC

NH+

C

H

C

H

H

R COOLys238

NH2

Tyr64

OH

external aldimine

H

PO

O

O-

-

O

Tyr64

OH

Lys238

NH3

+

HC

NH+

C

C COOH

H

R

quinonoid

H

PO

O

O-

-

O

Tyr64

OH

Lys238

NH2

HC

NH+

C

COO- C

H

H

RH

+

PLP aminoacrylate

NH3 + pyruvate + PLP

Figure 7. Proposed role of Lys 238 and Tyr 64 in the α,β-elimination reaction mechanism catalyzed by

cystalysin.

THE ALANINE RACEMASE AND TRANSAMINASE ACTIVITIES

OF CYSTALYSIN

Although optimized for catalyzing the α,β-elimination, the active site structure of

cystalysin contains structural elements required for the catalysis of other reactions typical of

PLP-enzymes. In particular, Lys 238, the PLP-binding lysine, is located on the si face of PLP,

while Tyr 123 and Tyr 124 are located on the re face of the cofactor. These active-site

residues are properly positioned to act as acid-base catalysts for the pro-S and pro-R proton

abstraction from an appropriate substrate. A similar active site architecture has been observed

in alanine racemase from Bacillus stearothermophilus [19], a protein belonging to Fold type

III group of PLP-dependent enzymes, which occurs ubiquitously in eubacteria and catalyzes

the interconversion of L- and D-alanine. As shown in Figure 8, the comparison of the active

site of cystalysin and alanine racemase reveals a similar arrangement of the acid-base

catalysts even if in alanine racemase Tyr 265 is located on the si face of PLP while Lys 39 is

located on the re face [19]. On the basis of the crystal structure of the complex of alanine

racemase with alanine phosphonate it has been suggested that the enzyme may act by a twobases racemization mechanism. This mechanism involves one acid-base catalyst which

abstracts the α-proton from the substrate, and a second acid-base catalyst which reprotonates

Cystalysin: An Example of the Catalytic Versatility… 109

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