3850 PART 20 Frontiers
cancer formation in mice, causally linking p53 mutations with cancer.
Normally, p53 functions as a transcription factor that suppresses the
transcription of genes involved in apoptosis resistance. While myriad
mutations in p53 have been described, some result in an alternate
conformation that interacts with different HSP70 chaperones within
the PN. Binding of the mutant p53 protein to these chaperones affects
the DNA binding property necessary for its tumor-suppressor function
and facilitates binding to other domains, resulting in changes in gene
expression that protect malignant cells from apoptosis.
■ STRONGLY ENHANCED AGGREGATION
PROPENSITY AND AMYLOID FORMATION
(ALZHEIMER’S DISEASE, PARKINSON’S
DISEASE, AMYOTROPHIC LATERAL
SCLEROSIS, HUNTINGTON’S DISEASE, TYPE 2
DIABETES MELLITUS)
In some individuals, native or mutant proteins include sequence motifs
that promote an alternate highly ordered aggregation state when the
cellular environment is altered and in aging. The most common of
these motifs are the beta-pleated sheets, which, when exposed to
the solvent environment of the cell, easily bind to one another in an
iterative process that can accommodate many thousands of molecules
that form insoluble cross-beta sheet amyloid species. Broadly, these
intracellular aggregates are classified as oligomers (2–24 molecules),
protofibrils (rods 4–11 nm wide and 200 nm long), and amyloid fibrils
with a similar width to protofibrils but microns in length. While the
formation of oligomers is thermodynamically unfavorable, polymerization is favorable, causing aggregates to seed slowly but grow exponentially. In some cases, for example, Huntington’s disease, familial
forms of Alzheimer’s disease, and ALS, aggregation is accelerated by
mutations. However, in many cases, the aggregates contain other cellular proteins that share biophysical properties of aggregation propensity
or reflect dysfunction in the PN that facilitates their seeding or propagation (see below). While in most instances, damage caused by protein
aggregates is localized to the cells in which they form, as occurs with
islet amyloid peptide in some patients with type 2 diabetes, amyloidogenic proteins associated with neurodegenerative diseases have been
shown to “spread” between cells. Damage to neurons by aggregates in
Alzheimer’s disease can elicit a local inflammatory response by resident immune cells in the brain, both of which contribute to pathology.
Much effort has been directed toward the detection of aggregates and
amyloid and the development of small molecules or antibodies that
block further growth or the enhancement of cellular activities of the
PN to suppress protein misfolding.
■ SECRETED AGGREGATED AND AMYLOID SPECIES
CAUSING SYSTEMIC AMYLOIDOSIS
In patients with systemic amyloidosis, the secretion of large amounts
of aggregation-prone proteins results in the deposition of aggregates in
many tissues. These proteins can include immunoglobulins secreted
from plasma cells in patients with systemic inflammation or multiple
myeloma or other aggregation-prone proteins including transthyretin.
Similar to other aggregate-induced diseases, mutations in transthyretin
that facilitate polymerization are associated with an increased risk of
developing systemic amyloidosis with advancing age. These aggregates
induce cellular toxicity, inflammation, and matrix reorganization that
interfere with function in an organ-specific manner. Deposition of
amyloid produces stiffness where there should be flexibility, creates
barriers where there should be free flow, and distorts size where there
should be fit. The stiffness is particularly damaging to the heart, lung,
and blood vessels and both smooth and skeletal muscle. The barrier
effect can result in malabsorption in the gastrointestinal tract and glomerular dysfunction, cardiac and peripheral nerve conduction defects,
and limitation of joint range of motion.
■ NATIVE PROTEINS PRONE TO AGGREGATE
WHEN THE CELLULAR ENVIRONMENT IS ALTERED
BY STRESS AND AGING
While well-defined genetic abnormalities have been essential in
elucidating the molecular mechanisms that underlie the formation
of protein aggregates and causally linking them to disease, many, if
not most, clinical diseases associated with the formation of protein
aggregates develop in patients without identified mutations. In these
patients, a decline in the chaperone and quality control mechanisms
of the PN allows exposure of aggregation-prone domains of normal
proteins to the solvent environment of the cell. Once seeded, these
protein aggregates can expand rapidly to induce local or systemic
injury. The decline in function of the PN that allows these aggregates
to form might develop gradually with advancing age or might occur
suddenly in response to an age-triggered biologic program, as occurs in
C. elegans.
■ INFECTIOUS DISEASES AND IMBALANCED CELL
STRESS RESPONSES IN AGING
A model in which the function of the PN is reduced in aging might
explain the disproportionate morbidity and mortality in older individuals exposed to systemic stress. While these stressors include infections, surgical or accidental trauma, sepsis, and myocardial infarction,
among others, pneumonia, the most common cause of death from an
infectious disease in the United States, provides an illustrative example.
As was evident during the COVID-19 pandemic, pneumonia morbidity and mortality disproportionately affect the elderly. Viral pneumonias, including those caused by influenza viruses and SAR-CoV-2, are
primarily localized to the lung, where they activate a local and systemic
inflammatory response and denude the alveolar lining. The resulting
hypoxemia and systemic inflammatory response injures distant organs
independent of viral injury. Impaired function of the PN during the
stress might allow seeding of tissues with toxic aggregates with longterm consequences. Repair of the damaged lung and distant organs
represents a major challenge to proteostasis that might be overcome
in younger individuals but fail in those who are older with poor stress
resilience. This loss of proteostasis resilience necessary to limit damage
and allow repair could explain clinical observations in pneumonia survivors who develop persistent lung injury, skeletal muscle dysfunction
impairing mobility, chronic kidney disease, cognitive dysfunction and
dementia, and an increased risk of ischemic cardiovascular events in
the year after hospital discharge.
■ FURTHER READING
Balch WE et al: Adapting proteostasis for disease intervention. Science
319:916, 2008.
Chandrahas VK et al: Coordinating organismal metabolism during
protein misfolding in the ER through the unfolded protein response.
Curr Top Microbiol Immunol 414:103, 2017.
Chiti F, Dobson CM: Protein misfolding, amyloid formation, and
human disease: A summary of progress over the last decade. Annu
Rev Biochem 86:27, 2017.
Eisele YS et al: Targeting protein aggregation for the treatment of
degenerative diseases. Nat Rev Drug Discov 14:759, 2015.
Labbadia J, Morimoto RI: The biology of proteostasis in aging and
disease. Annu Rev Biochem 84:435, 2015.
Levine B, Kroemer G: Biological functions of autophagy genes:
A disease perspective. Cell 176:11, 2019.
Mallucci GR et al: Developing therapies for neurodegenerative disorders: Insights from protein aggregation and cellular stress responses.
Ann Rev Cell Dev Biol 36:165, 2020.
Song J et al: Quality control of the mitochondrial proteome. Nat Rev
Mol Cell Biol 22:54, 2020.
3851 Novel Approaches to Diseases of Unknown Etiology CHAPTER 492
information, i.e., patients and their families, health care providers,
government health care agencies, insurers, epidemiologists, genetic
counselors, pharmacologists, biologists, etc. As an example, a diagnosis
of Parkinson’s disease in an adult is based on the progressive emergence
of signs and symptoms of bradykinesia, rigidity, asymmetric rest tremor,
and postural instability (clinical diagnosis), which are typically responsive to the administration of L-dopa (a therapeutic response biomarker).
Together, these are cardinal features of striatonigral degeneration (a
mechanistic diagnosis), a process associated with neuronal α-synuclein
deposition and Lewy body pathology (histopathologic diagnosis) often
based on a genetic susceptibility conferred by mutations in genes such
as synuclein (SYNCA, a molecular diagnosis) and likely influenced by
environmental exposures (e.g., manganese or other neurotoxins).
With ongoing advancements in medical science and technology,
the standard for what constitutes a reasonable diagnosis continues to
evolve toward higher levels of specificity. Efforts to adopt the principles of precision medicine include a growing emphasis on the context
of disease within the genetic repertoire, environment, social factors,
medical history, nutrition, and the microbiome of any given individual. Examples include cancer susceptibility, genetically determined
idiosyncratic reactions to medications, and unique pathogen susceptibilities in patients with certain immune deficiencies.
■ UNDIAGNOSED RARE DISEASES
Most undiagnosed diseases are rare. While individual rare diseases have
a low prevalence by definition, they are numerous in aggregate. It is
estimated that >6000 rare diseases affect millions of people throughout
the world. Many rare diseases have a genetic basis and onset in childhood. As the cloud of uncertainty inherent in the undiagnosed disease
state is removed, new disease-specific counseling, therapies, resources,
community engagement, and advocacy opportunities become possible.
■ THE EFFECT OF THE UNDIAGNOSED
DISEASE STATE ON THE PATIENT
Patients with an undiagnosed disease are frequently driven to understand the basic nature of their ailment (what, when, where, how, etc.).
Individuals, families, physicians, and society, however, might have a
wide range of tolerance to the uncertainties associated with the undiagnosed disease state. Being undiagnosed has profound detrimental
effects. Patients can go undiagnosed for decades, leading to personal
and family uncertainty, high levels of stress, decreased productivity,
limited accessibility to disease-specific counseling and resources,
decreased quality of life, and excess utilization of medical services.
APPROACH TO CHALLENGING DISEASES
OF UNKNOWN ETIOLOGY
Approaches to a patient with an undiagnosed disease can be separated
into two categories. The first is a new assessment by a consultant, new
provider, or diagnostic referral center. The second is periodic reassessment by an existing provider for a patient who remains undiagnosed.
■ COMPREHENSIVE DATA COLLECTION
A potentially time consuming but critical initial step is the aggregation
of all available medical data. Essential records are listed in Table 492-2.
TABLE 492-1 Factors Contributing to the Presence of an
Undiagnosed Disease
FACTOR EXAMPLE
Misleading information False-negative and false-positive test results
Rare disorder Many inherited disorders have only been
identified in a few individuals. For example,
sialuria, a well-understood disorder of sialic
acid metabolism, has been reported in
10 individuals (OMIM 269921).
Unusual causes of common
diseases, including atypical
course of illness
Insulin-dependent diabetes mellitus may be
the presenting feature for the relatively rare
autoimmune polyendocrinopathy syndrome,
type I (OMIM 240300).
Presence of multiple disorders
(blended phenotypes)
For an example, see PubMed ID 24863970.
Lack of characteristic
symptoms of known disease
Diseases are commonly ascertained via
cardinal signs or symptoms leading to
incomplete ascertainment of all possible
disease presentations. For instance, not
all persons with Marfan’s syndrome are
tall relative to other family members. For
progressive diseases, pathognomic signs
and symptoms may be missing in early stages
of disease.
New disease No prior knowledge or record of such disease
Incorrect affected status
assignments in family history
A heritable disorder may be inappropriately
excluded if family history information is
incorrect.
Primary disease manifestations
obscured by other factors
Maladaptive behavior, medication effects, and
secondary disease manifestations may obscure
signs and symptoms of a primary disorder.
Disease not expected in region
or population
Cystic fibrosis in persons of African ancestry,
sickle cell disease in persons of northern
European ancestry; infectious agents with
marked geographical incidence patterns
Diseases thought to be
eradicated
Poliomyelitis
Diseases occurring in
unexpected time of life
Parkinson’s disease in children, lysosomal
storage disease in adults
Malingering Feigned disease features intended to achieve
secondary gain (Munchausen syndrome)
Rare disease mechanisms Transmitted or sporadic prion disease, unusual
zoonotic diseases
Abbreviation: OMIM, Online Mendelian Inheritance in Man.
TABLE 492-2 Essential Records for Undiagnosed Disease Patients
1. Any narrative summaries that detail the course of the illness
2. Copies of original test results with names, dates, testing circumstances,
normal ranges, and test facility information
3. Electronic copies of imaging studies
4. Consultation notes
5. Hospitalization intake and discharge summaries
6. Accurate family history accounts and family relations
Optional but potentially useful records include:
1. Photographs and/or videos of disease manifestations
2. Longitudinal data (growth charts, symptom logs, serial lab measurements)
3. Data or specimens that could be reanalyzed, including pathology specimens
and genomic sequencing of raw data
THE UNDIAGNOSED DISEASE STATE
The term disease, etymologically meaning “lack of ease” or the presence
of discomfort, is defined as an abnormal state that negatively affects the
structure or function of all or part of an organism and that is not due
to any immediate external injury. When referring to a person experiencing a disease, the word patient is used in its original, meaning “the
one who endures suffering.” These terms are well suited when referring
to patients with undiagnosed diseases. A patient with an undiagnosed
disease is one for whom a medical diagnosis is not discerned after reasonable efforts utilizing established methods and procedures. Multiple
factors may contribute to a failure to reach a diagnosis (Table 492-1).
Patients who are affected by an undiagnosed disease for a protracted
period of time can be said to be in an undiagnosed disease state.
■ THE MEANING AND CONTEXT OF A DIAGNOSIS
A diagnosis often entails hierarchical levels of information specificity with varying levels of relevance to the users (consumers) of such
492 Novel Approaches to
Diseases of Unknown Etiology
David Adams, Camilo Toro, Joseph Loscalzo
3852 PART 20 Frontiers
The overall goal of data collection is a full understanding of the
course of the disease and a verification of critical data elements used
for diagnostic decision-making. Incorrect or partial second-hand
accounts of prior test results contribute substantively to incorrect or
missed diagnoses.
Analysis of the collected data allows for reconstruction of the
process by which previous disease presentation, diagnostic thought
processes, and test interpretation led to the current understanding of a
patient’s illness. Unintentional obfuscation of the history and findings
can result from missing records, incomplete recall by the patient and
fragmentation, and propagation of information (and misinformation)
in the medical record. Optimally, the presence and character of key
features of the illness will be reinforced by perspectives derived from
multiple evaluations.
■ VALIDATION OF SUBJECTIVE AND
OBJECTIVE FINDINGS
Teasing apart the layers of a patient’s presentation often uncovers a
variety of adaptive (and maladaptive) coping strategies. Some are
idiosyncratic to the disease state (e.g., sun avoidance in a patient with
xeroderma pigmentosum), whereas others are driven by psychosocial factors and could become primary drivers of the phenotype. It is
important to consider, however, that patients believed to have “functional” or “somatoform” disorders, e.g., nonepileptic events (pseudo
seizures), frequently have concurrent bona fide epileptic events. Careful consideration of clinical phenomenology and associated findings on
physical examination and ancillary investigations may provide clarity,
affirmation, and effective redirection. Distinct clinical, radiographic,
and laboratory abnormalities provide entry points to the generation
of a differential diagnosis and could become effective biomarkers of
disease progression and response to interventions.
Testing Strategies and New Technology The historical exclusion of a diagnostic hypothesis may be based on testing that is no longer state of the art. For example, congenital disorders of glycosylation
(CDG) were historically diagnosed using transferrin isoelectric focusing. It was subsequently found that the diagnosis of many CDG types
required mass spectrometric and molecular approaches. The initial
assessment of a patient with an undiagnosed disease should include
a reassessment of the diagnostic logic and data used in past decisionmaking. In the absence of concrete diagnostic leads, the use of broad
scope screening tools may prove beneficial in generating meaningful
diagnostic hypotheses (Table 492-3). In some cases, newer testing
options may be difficult to obtain and/or be costly. Prior probability of
disease and available resources will factor in determining whether new
diagnostic testing is practical.
Molecular Approaches, Including Genomics The availability
and variety of clinical molecular modalities have transformed diagnostic testing in many settings. These advances have arisen from both
testing scope, e.g., exome-wide, genome-wide, and transcriptome (RNA
sequencing [RNA-Seq]) sequencing, and new medical knowledge, e.g.,
new disease-gene associations and molecular interaction networking
(network medicine). Complementary screening tools, such as metabolomics, show diagnostic promise, particularly when combined with
sequencing data to generate a fuller picture of disease manifestations.
Simultaneous consideration of multiple data types can provide a means
of appreciating overlapping and reinforcing evidence, with the potential
to inform both hypothesis-driven and agnostic approaches to diagnosis.
HYPOTHESIS-DRIVEN MOLECULAR TESTING Hypothesis-driven testing implies that a defined set of heritable (or potentially heritable) disorders is the principal impetus for testing. Selection of a targeted gene
sequencing panel, possibly augmented with structural variant detection technologies, may allow for improved sensitivity, lower cost, and
fewer unrelated (secondary) findings relative to full exome or genome
sequencing studies. In the setting of an initial undiagnosed disease
evaluation, prior sequencing panels may not include recently discovered genes. Testing with an updated panel or targeted sequencing of a
newer gene is an option for consideration. In some cases, sequencing
panels are generated by selective reporting of relevant genes within an
exome data set. In such cases, it may be possible to expand the analyses
to new genes of interest without additional sequencing.
AGNOSTIC MOLECULAR TESTING Agnostic testing typically uses data
from exome or genome sequencing and considers all possible diagnoses, even those with a low pretest probability of being present. This
approach can also generate hypotheses for potentially new disease-gene
associations. Analysis of the sequencing data typically includes an unrestricted search throughout the entire human genome or exome space.
DNA sequence variants with potential medical relevance are identified
first by bioinformatic characteristics, including known association with
disease, predicted importance for protein function, interspecies conservation, population frequency, and an evolving list of other factors. The
list of candidate variants is then subject to expert review (i.e., curation).
The interpretation of test results in this setting is highly influenced by
both the adequacy of communication between the clinical and testing
teams and the information content of the data sources used to annotate
each of the thousands of variants generated in the course of sequencing.
There is a rapid proliferation of new testing platforms and analytical
tools with the potential to contribute to solving undiagnosed diseases,
but it remains challenging to judge their broad utility. While awaiting
for systematic validation and practice standards, novel techniques may
be considered in special cases where a diagnostic hypothesis is closely
TABLE 492-3 Clinically Available Tests with Notable Utility for
Undiagnosed Cases
TEST TARGET PHENOTYPES RATIONALE
Single nucleotide
polymorphism microarray
and/or karyotype
Dysmorphic features,
cognitive impairment,
neurodevelopmental
disorders
Genomic structure
abnormalities may
be missed by other
testing
Exome or genome
sequencing
Any undiagnosed disease
that is chronic and not
clearly acquired
Tests a broad
range of potentially
unconsidered
diagnostic entities
Lysosomal storage
diseases (LSDs),
molecular or enzymatic
tests. urine organic
acids, urinary
glycosaminoglycans
(GAGs), oxysterols
Progressive neurologic
disorders, psychiatric
disorders
Some LSDs have
nonspecific
presentations, and
adult-onset cases are
often missed
Congenital disorders
of glycosylation, Apo
CIII and N-glycan mass
spectrometry
Pediatric-onset disorders,
cognitive impairment,
neurologic phenotypes
Large group of
disorders; phenotypes
for many still being
characterized.
Biochemical disorders,
ammonia, serum polyols,
urine purines and
pyrimidines, plasma
amino acids, very-longchain fatty acids
Neurologic phenotypes,
especially with waxing and
waning course, selective
speech involvement or
patients with unusual selfselected diets
Metabolic disorders
may have nonspecific
symptoms, and adultonset cases are often
missed
Mitochondrial sequencing
and mitochondrial
depletion studies;
biochemical screening
with serum lactate, blood
pyruvate, plasma amino
acids, and GDF-15
Complex multisystem
disorders with
neurometabolic, endocrine,
and gastrointestinal
symptoms, muscle
dysfunction, and waxing
and waning or progressive
course
Large group of
disorders with
a wide range of
presentations; yield is
improved by studies in
affected tissue (e.g.,
liver or muscle)
Cerebrospinal fluid
(CSF) studies including
amino acids (AAs),
lactate, pterins,
methyltetrahydrofolate
(MTHF), or special CSF
flow studies
Synthetic neurotransmitter
defects in patients with
unexplained fluctuating
encephalopathy/movement
disorders or patients with
atypical neuroinflammatory
syndromes
Patterns of profiles
point to particular
enzymatic deficits
in neurotransmitter
synthesis or
characterization of
unique immunologic
profiles of
inflammatory central
nervous system
diseases
3853 Novel Approaches to Diseases of Unknown Etiology CHAPTER 492
aligned with the type of data generated by a specific testing strategy
(Table 492-4).
■ PERIODIC REEVALUATION
The cornerstone for the care of a patient in an undiagnosed disease
state is a plan for periodic reevaluation until a diagnosis is achieved.
The Undiagnosed Diseases Network, a 10-year National Institutes of
Health–sponsored national program specifically designed to evaluate undiagnosed patients (with several international counterparts),
reported a diagnostic rate of ~30%. This finding illustrates the fact that
many affected individuals remain in an undiagnosed state for a protracted period of time. For a medical provider, the care of an undiagnosed patient includes a program for symptomatic care, support related
to the undiagnosed state itself, and plans for a regular reevaluation
strategy seeking new insights into the diagnosis by following its time
trajectory. Reevaluation is guided by emerging knowledge in the field,
disease progression, and the development of new signs and symptoms.
The appearance of a similar disease in a sibling or close relative may
provide critical insight. Communication with the patient is an essential component. Many individuals with an undiagnosed disease report
feeling abandoned by their providers once diagnostic ideas have been
exhausted. Providers themselves may feel discouraged in being unable
to provide a diagnosis. The institution and discussion of a well-defined
plan for periodic reassessment and communication can help reinforce
the patient-provider relationship and set reasonable expectations.
Reevaluation of Differential Diagnosis The key to success for a
planned reevaluation visit is preparation. The problem and differential
diagnosis lists should be subject to careful, evidence-based review. New
or resolved clinical features may add or remove diagnostic considerations. The passage of time may result in the emergence of distinct new
phenotypic manifestations that serve as new clues in the formulation of
a definite diagnosis. Special consideration should be given to the effects
of reaching maturity and aging. The establishment of a phenotype as
being static versus progressive has prognostic value. Careful documentation of the rationale for including or excluding individual disorders
will streamline the process for both future reevaluations and the need
for consultants. Concurrent development of common diseases should
be thoughtfully considered as a possible component of the primary
undiagnosed condition. For example, insulin-dependent diabetes mellitus could be a feature of the rare autoimmune polyendocrinopathy
associated with mutations in the autoimmune regulator gene AIRE.
New Literature Keeping abreast of current literature is an important and challenging activity for all medical providers as the body of
medical knowledge continues to grow exponentially. For undiagnosed
diseases, newly reported disorders and disease-gene associations are an
important source of diagnostic resolution. Literature search tools such
as PubMed can be augmented by online resources that connect clinical
signs and symptoms (phenotypes) to disorders. For instance, using the
search terms “cardiomyopathy arthropathy diabetes hyperpigmentation” in the Online Mendelian Inheritance in Man website (https://
omim.org) produces a list of disorders that includes hemochromatosis.
In the context of an undiagnosed disease, this type of phenotypedriven approach can be used to search for new, relevant publications
and disorders. Tools that automate such searches continue to be developed in both open-source and commercial settings. The success of
these approaches is augmented by iterative application, ideally as part
of formal, periodic reevaluation of the undiagnosed patient.
■ GENOMICS
The use of medical testing based on the determination of DNA
sequence and structure (sometimes referred to as molecular testing)
has proliferated in recent years. A wide variety of approaches are available to the clinician, from single-gene sequencing to exome or genome
sequencing. Many reviews of this topic are available (see Adams and
Eng, 2018, in “Further Reading”). Consultation with colleagues trained
in genetics can be useful when developing an optimal testing approach.
In some cases, genetic testing results may already exist in the medical record during the initial evaluation of an undiagnosed patient. This
is increasingly true for younger patients; exome and genome sequencing are being used earlier, and with increasing frequency, for complex
diagnostic challenges. Reanalysis of previously obtained exome and
genome data should start with consideration of both the age and quality of the study and the reported patient phenotype at the time of the
study report. For sequence results generated in a clinical laboratory,
a discussion between the provider and the laboratory director often
answers important questions about recommended next steps. The discussion should touch on how technologic advances have affected the
utility of the older data and whether the laboratory offers reanalysis
of the data. At a minimum, the provider, the testing laboratory, or an
identified subspecialist should review previously reported DNA variants of unknown significance considering interval reports about the
gene in question. More advanced reanalysis strategies are emerging and
may be offered by the testing laboratory.
Some laboratories offer release of raw DNA sequencing data to
their patients on request. The utility of raw data varies and depends on
the identification of bioinformatics collaborators willing to reanalyze
the data. Sequencing data obtained as part of a research study may
not be suitable for clinical diagnostic purposes. In practice, raw and
research-generated sequencing data are most useful when a collaborating researcher can be identified.
When considering a new sequencing test, the inclusion of the parents and siblings of the proband has the potential to provide enormous
value in some situations. Discussion of an optimal approach with an
expert colleague or the testing laboratory is encouraged.
■ EXPOSOME
In many cases, a detailed occupational and environmental exposure history should be obtained. Some rare disease phenotypes are
pathognomonic of specific toxicant exposures (e.g., mesothelioma
TABLE 492-4 Emerging or Special Testing Strategies and Related
Diagnostic Questions
TESTING STRATEGY RELATED DIAGNOSTIC QUESTION
AVAILABLE
CLINICALLYa
Transcriptomics,
RNA-Seq
Relevance of splice, regulatory, and
other noncoding variants; correlated
changes in gene expression within
pathways
No
Metabolomics Hypothesis generation via
nontargeted approaches, correlated
pathway changes, correlation with
molecular findings
Yes
Epigenetics Diseases known or suspected to be
caused by methylation or parent-oforigin effects
Some
Transcriptional
profiling
Search for profile particular
to certain disease states, e.g.,
interferon inducible genes panels
(interferon signature) in certain
autoinflammatory disorders
Some
Specialized, diseasespecific testing
Prion-related diseases, metabolic
diseases, and many other assays
Some
Functional validation Model organisms, cell biology, and
other approaches to validating
a hypothesized gene-disease
association
No
Metagenomics Search for molecular fingerprints
of other organisms (e.g., infectious
agents) within human samples
Yes
Long-read
sequencing
technology
Accurate resolution of lowcomplexity regions of the human
genome (repeat expansion disorders)
and complex genome structural
rearrangements
No
Deep sequencing Accurate resolution of low levels of
mosaicism
Some
a
Available clinical tests are often a small subset of approaches available via
research collaboration. Clinical testing offerings are evolving rapidly and should be
reassessed periodically.
3854 PART 20 Frontiers
and asbestos exposure, clear cell adenocarcinoma of the vagina and
intrauterine diethylstilbestrol (DES) exposure, chloracne and exposure
to halogenated aromatic hydrocarbons). For the most part, however,
chemical toxicant exposures do not produce unique phenotypes.
Rather, chemical exposures operate in conjunction with lifestyle
factors (e.g., smoking, alcohol intake, and nutritional status), differential host susceptibility (determined by age, sex, comorbidities,
genetics, etc.), and nonchemical stressors (e.g., psychosocial stress)
to produce (1) common, readily diagnosed medical diseases (e.g.,
asthma); (2) unusual or nonspecific phenotypes (e.g., erethism and
metallic mercury exposure); or (3) atypical presentations of otherwise
well-characterized disease states, initially considered an undiagnosed
disease (e.g., manganese-induced parkinsonism). The nonspecificity
typical of chemical-induced disease risk is further complicated by lack
of exposure biomarkers for many common environmental toxicants
(e.g., volatile organics), the short half-life of some contaminants (e.g.,
arsenic), and the possibility of decades long latency between exposure
and disease onset (e.g., chemical carcinogenesis or dietary exposures
to specific biochemical risk factors for atherothrombosis). In addition,
we live in an era in which new chemicals are introduced into consumer
products and the environment at a pace well beyond our capacity to
characterize their toxicity. Within this context, one of the most powerful tools for ascertaining chemical-related disease risk is a systematic
exposure history. Although there are no standardized instruments for
this purpose, there are published guidelines to implement exposure
assessments (Goldman and Peters, 1981; see “Further Reading” below).
These include a multistep approach to exposure assessment including
a job history; a review of exposures at work and at home or via hobbies
and recreation; ascertainment of any temporal relationship of symptoms or disease onset to work, home, or recreational activities; and the
food frequency questionnaire. If this screening identifies a potential
exposure or exposures of concern with respect to patient symptoms
and phenotype, a second step of evaluation involves a more detailed
history to identify specific suspect agents, options for quantitative
environmental exposure assessment (e.g., household tap water sampling, review of workplace Material Safety Data Sheets [MSDSs]) and
biomonitoring, and etiologic plausibility for at least some aspects of the
patient’s phenotype.
The traditional approach to focused external exposure assessment
proposed above does not, however, provide an integrated, quantitative
measure of all exposures over the life course, an exposure characterization of particular interest for the risk of chronic diseases such as cancer
or atherothrombosis. The exposome has been proposed as a promising
means for capturing the totality of human exposure over a lifetime (analogous to the totality of genetic exposure assessed via genomic analyses),
including not only external chemical or dietary/foodome (Barabasi
et al., 2020; see “Further Reading” below) exposures but also internal (e.g.,
metabolic, hormonal, microbiome) influences and psychosocial factors.
However, techniques for measuring the exposome are in relatively early
stages of development, are limited by the substantial variability in human
exposure experience, and have not yet been designed to capture complex
combinations commonly encountered in environmental or occupational
exposure settings (Peters et al., 2012; Wild, 2012; Brunekreef 2013;
Barabasi et al., 2020; see “Further Reading” below). This important element of assessing patients with undiagnosed disease is, however, evolving rapidly and offers the promise of becoming a more formal part of the
evaluation of many patients with undiagnosed disease.
■ ENGAGEMENT OF RESEARCH APPROACHES
Establishing a research collaboration for a patient with undiagnosed disease can be both challenging and rewarding. Time and effort resources
are likely to limit this approach to a subset of patients with particularly
compelling clinical presentations and a strong hypothesis about disease
causation. The process must include early and detailed communication
with the patient. Several approaches may be considered.
Leveraging Phenotypic and Genotypic Similarities For a
patient with a rare or undiagnosed disease and distinct presenting features, finding similarly affected individuals adds substantial benefits.
It can encourage research, provide a community for affected patients,
and improve the chances of finding commonalities in pathogenesis
and therapeutic strategies. Phenotypic aggregation may also allow the
patient to connect with consortia invested in related medical presentations. Examples include organizations dedicated to the study of related
diseases such as leukodystrophies, autoinflammatory disorders, and
even undiagnosed diseases, NORD, the National Organization for Rare
Disorders (rarediseases.org) can be a useful starting point. The Office
of Rare Disease Research within the National Center for Advancing
Translational Science supports consortia under the Rare Disease Clinical Research Network program. Building patient cohorts may also be
based on specific biological mechanisms or pathways, for example, the
United Mitochondrial Disease Foundation.
Data Sharing The proliferation of DNA sequencing technology and
the subsequent generation of many DNA variants of unknown clinical
significance have prompted the creation of data-sharing resources specifically designed to match similar cases submitted by clinicians and
researchers around the world. For example, a clinical exome report
may identify variants in a gene with a potential but unproven relationship to the patient’s presenting illness. The clinician could enter the
gene name into a gene-matching database, and if the same gene name
had been already entered by a different submitter, the database would
flag a match and send contact information to both submitters. The
matching procedure has the potential to identify additional cases of
an ultrarare or newly described condition, while avoiding the sharing
of the patient’s personal health information. Embellishments of this
approach involve inclusion of phenotypic features, data entry by families, and specific details of sequence variants. Example systems include
GeneMatcher, PhenomeCentral, and DECIPHER.
Collaboration Collaborations around undiagnosed disease
patients may take many forms. Studies focusing on related medical
conditions can sometimes be identified using the https://clinicaltrials.
gov website, which lists many U.S. and non-U.S. clinical studies. Databases of clinical information (e.g., this textbook, GeneReviews) can
be used to identify subject matter experts for related conditions. Such
experts can be queried about ongoing studies. In some cases, a willingness to work with consenting families to provide biological specimens
can open additional avenues for collaboration.
■ CHALLENGES
Data Portability Obtaining specimens, data, and records for a
chronically undiagnosed patient can be time-consuming and challenging. Families may be charged fees for obtaining copies of old studies.
Although continuing advances in record access are occurring, families
should be encouraged to collect and maintain an updated collection
of medical records. These should include copies of consultation notes,
original laboratory results, and radiology studies (the latter preferably
in electronic form). These record collections are useful for consultation, second opinions, and transitions between primary providers.
Managing Illness Behaviors, Expectations, and Secondary
Manifestations Patients with undiagnosed diseases may present
in any stage of the grieving process. Coping with uncertainty, loss of
abilities, work, relationships, autonomy, and financial security compound the primary manifestation of the disease. Patients may have a
wide range of expectations about the possible benefits of achieving a
diagnosis, including successful therapy. Patients of reproductive age
may find that their greatest uncertainty surrounds the potential heritability of their disorder, its effects on future reproductive decisions, and
the potential risk it may represent to their children and living relatives.
These factors may be equally or more disabling than the primary illness
and require an individualized and multidisciplinary approach.
CONCLUSION
Chronically undiagnosed diseases present a complex challenge to
patients, medical providers, and society at large. Development of a
comprehensive plan for evaluation, reevaluation, and support requires
a substantial investment of time and effort (Fig. 492-1).
3855 Novel Approaches to Diseases of Unknown Etiology CHAPTER 492
Consultative assessment
Comprehensive review and
re-evaluation of evidence
for prior conclusions
Testing to validate key
results and evaluate new
diagnostic hypotheses
Review new records, signs,
symptoms, and
environmental history
Consider new literature and
availability of new or
updated testing strategies
Consider hypothesisgenerating tests including
genomic sequencing
DIAGNOSIS?
Document reasoning and
supporting evidence
Yes No
Consider collaboration to
explore hypotheses
Work with patient to define
concrete follow-up plan
Reformulate differential
diagnosis
Iterative assessment
No diagnosis after
comprehensive evaluation
Symptomatic care,
consider empiric treatments
FIGURE 492-1 Approach to the patient with an undiagnosed disease.
Achieving an accurate diagnosis removes at least one level of uncertainty and allows for disease-specific counseling, therapies, resources,
community engagement, and advocacy opportunities otherwise not
afforded to undiagnosed patients.
■ FURTHER READING
Adams DR, Eng CM: Next-generation sequencing to diagnose suspected genetic disorders. N Engl J Med 379:1353, 2018.
Barabasi AL et al: The unmapped chemical complexity of our diet.
Nat Food 1:33, 2020.
Brunekreef B: Commentary: Exposure science, the exposome, and
public health. Environ Mol Mutagen 54:596, 2013.
Goldman RH, Peters JM: The occupational and environmental
health history. JAMA 246:2831, 1981.
Lee CE et al: Rare genetic diseases: Nature’s experiments on human
development. iScience 23:101123, 2020.
Peters A et al: Understanding the link between environmental exposures and health: Does the exposome promise too much? J Epidemiol
Community Health 66:103, 2012.
Splinter K et al: Effect of genetic diagnosis on patients with previously
undiagnosed disease. N Engl J Med 379:2131, 2018.
Wild CP: The exposome: From concept to utility. Review. Int J Epidemiol
41:24, 2012.
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Index
in intestinal ischemia, 2507
in intestinal obstruction, 2510
in malabsorption disorders, 2468t
mechanisms of, 108, 109t
in pancreatic cancer, 658
in pancreatitis, 111, 111t, 2659, 2666–2667, 2668
in pelvic inflammatory disease, 1087
in peptic ulcer disease, 2441
in peritonitis, 1054–1055, 2516
referred, 109t, 110
Abdominal paracentesis, 323, 324, 489
Abdominal reflexes, 3281
Abdominal wall disorders, 110
Abdominojugular reflex, 1817, 1937
Abducens nerve, 3279
Abducens nerve palsy, 230, V3
Abducens nerve paresis, 229
Abduction and external rotation test, 2112
Abemaciclib, 513t, 548t, 552, 613t, 624
Aβ (amyloid beta)
in AD, 3302, 3370–3372, 3372f, 3373f
circadian fluctuations in accumulation of, 3809
in neurodegenerative diseases, 3298–3299, 3299t,
3422
in protein aggregation and cell death, 3297, 3297f
as therapeutic target, 3374, 3375
Aβ amyloidosis, 878
Aβ antibodies, 3375
Aβ fibers, 91
Abetalipoproteinemia (acanthocytosis, BassenKornzweig syndrome)
clinical features of, 304, 3139t, 3145
genetic considerations in, 3145, 3145t, 3426
pathophysiology of, 2463, 3145, 3426
peripheral blood smear in, 425, 428f
retinitis pigmentosa, 227
treatment of, 2532
vitamin D deficiency in, 2531
Aβ2
M amyloidosis, 878, 878t, 883. See also
Amyloidosis
Aβ/tau protein, 191t, 193–194
Aβ vaccine, 3375
ABI (ankle-brachial index), 2076, 2108
Abiotrophia spp., 1028, 1196
Abiraterone, 544, 687, 687f, 688
ABL1 gene mutations, 820–821
Ablation
alcohol septal, A11
catheter-based. See Catheter-based ablation
with stereotactic radiation, 1923, 1923f
ABL gene mutations, 500t, 501
ABO RBC blood group system, 884, 887, 887t
Abortion, 1304, 1353, 1443, 3037
Abortive infection, 1457
ABPA. See Allergic bronchopulmonary
aspergillosis (ABPA)
Abruptio placenta, 3763
Abscess
anorectal, 2504–2505, 2504f
brain. See Brain abscess
epidural. See Epidural abscess
head and neck, 254–255
intraabdominal. See Intraabdominal abscess/
infections
periapical, 256
peritonsillar, 255, 1351
perivalvular, 1024
retropharyngeal, 255
submandibular, 255
subperiosteal, 251
tuboovarian, 1342, 1342f, 1353
Abscopal effect, 463
Absence seizures, 3306–3307, 3315f
Absent (vanishing) testis syndrome, 3002
Absolute risk reduction, 29
Absorption
of antibacterial drugs, 1150
of carbohydrates, 2460
disorders of. See Malabsorption disorders
of drugs, 466, 1150
of lipids, 2459–2460, 2460f, 2460t
luminal phase, 2458, 2460
overview of, 2459
post-mucosal, 2458, 2466
of proteins, 2460
small intestinal mucosal phase, 2458, 2462
Absorption spectrum, 417
Abstract thought, assessment of, 3279
Abulia, 183, 3327, 3327f
ABVD regimen, 853–854
ACA (Affordable Care Act), 44
Acalabrutinib, 513t, 544, 545t, 839, 850, 877
Acalculia, 198
Acamprosate, 2626, 3562
Acanthamoeba spp., 1718, S12
Acanthamoeba spp. infections
clinical features of, 1719
chronic meningitis, 1114t
keratitis, 220, 1698, 1699t, 1719
meningoencephalitis, 1097, 1719
seizures, 1699t
diagnosis of, 1719, 1719f, S12
epidemiology of, 1718, S12
invasive, 1698
treatment of, 1719
Acanthocytes, 425, 428f
Acanthocytosis. See Abetalipoproteinemia
Acantholysis, 400
Acanthosis, 2119f, 2696t
Acanthosis nigricans
anti-insulin receptor antibodies in, 2996
in diabetes mellitus, 3101, 3126
disorders associated with, 390, 599, A5,
A15
hyperpigmentation in, 390, A5
in metabolic syndrome, 3154
in obesity, 3086
Acarbose, 2452, 3110t
Accelerated idioventricular rhythm (AIVR), 1910f,
1917, 1917f, 2063, A8
Accelerated junctional rhythm, 1896, 2063
Accessory pathways (APs)
arrhythmias associated with, 1896
characteristics of, 1896
in preexcited tachycardias, 1897, 1898f
treatment of, 1897–1898
in Wolff-Parkinson-White syndrome. See WolffParkinson-White syndrome
A
AA amyloidosis, 882
clinical features of, 878t, 882, 2335t, 2336t
diagnosis of, 879f, 2345
etiology of, 882
incidence of, 882
pathogenesis of, 2345
treatment of, 882, 2345
AAG (autoimmune autonomic ganglionopathy), 3434
AAS abuse. See Anabolic-androgenic steroid (AAS)
abuse
AAT. See α1
-Antitrypsin (AAT)
AAV (adeno-associated virus), 644, 3415, 3685t, 3688
AAV-LPL, 3688
Abacavir
adverse effects of
genetic considerations in, 409, 1555, 1573
in HIV infection, 1573, 1587t
hypersensitivity, 412, 1573. See also Druginduced hypersensitivity syndrome
(DIHS)
genetic variations in response to, 477t, 478, 479
for HIV infection, 1587t
molecular structure of, 1590f
resistance to, 1592f
Abaloparatide, 3207–3208
A band, of sarcomere, 1803–1804
Abatacept, 2707t, 2762t, 2763, 2784, 2808, 2812
ABAT deficiency, 3269t
ABCA1 deficiency (Tangier disease), 1816, 3139t,
3146, 3487
ABCB1, 475t, 478
ABCB6 gene mutations, 396, 779t, 781
ABCD1 gene mutations, 3293, 3414t
ABCD2
score, 3344, 3344t
ABCDE rule, 580, A5
ABCG5/G8 gene mutations, 3141
ABCG5/G8 hemitransporter, 2641
Abciximab
actions of, 925f, 927–928
adverse effects of, 905–906, 905t, 928
discontinuation before lumbar puncture, S9
dosage of, 928
genetic variations in response to, 922t
indications for, 928
in PCI, 2066
pharmacology of, 928t
Abdomen
paradoxical movement of, 266
physical examination of, 321–322, 1816
swelling/distention of, 321, 322f, 2510. See also
Ascites
Abdominal aortic aneurysm. See Aortic aneurysm,
abdominal
Abdominal pain, 108
in acute intermittent porphyria, 3243
in appendicitis, 2514, 2514t
approach to the patient, 108t, 111–112
differential diagnosis of, 111t, 2382–2383, 2382t
in Fabry disease, 3258
history in, 111
in IBS, 2490
imaging in, 112
in immunocompromised patients, 110
Page numbers in bold indicate the start of the main discussion of the topic. Page numbers followed by “f ” or “t” refer to the page location of figures and tables,
respectively. Location entries starting with “A”(Atlases), “S” (Supplemental chapters), or “V” (Video chapters) indicate online-only chapter numbers; this content
available to all Harrison’s readers at www.accessmedicine.com/harrisons. Index entries that end with a “v” represent book page numbers where video content is
referenced.
INDEX
I-2 Accidents, 73t
ACD gene mutations, 3682t
ACE. See Angiotensin-converting enzyme (ACE)
ACE2, 3796
Acebutolol, 2040t, 3591t
ACE inhibitors. See Angiotensin-converting
enzyme (ACE) inhibitors
Acephalgic migraine, 3325, 3357
Aceruloplasminemia, 2533, 3232
Acetaminophen
for acute otitis media, 250
adverse effects of
hepatotoxicity, 472, 2586t, 2588, 2589f, A13
metabolic acidosis, 363
nephrotoxicity, 94
thrombocytopenia, 905t
for back pain, 123, 125
drug interactions of, 540t, 1400, 2861t
metabolism of, 2588
for migraine, 3362t
for osteoarthritis, 2861, 2861t
for osteoarthritis in older adults, 3747
overdosage/poisoning with, 2588–2589
for pain, 78, 78f, 94–96, 95t
as premedication for rituximab, 575
for prevention of acute mountain sickness, 3619
for SLE-related pain, 2746
for spinal stenosis, 121
for tension-type headache, 3365
for upper respiratory infection, 249
Acetaminophen-aspirin-caffeine, 3361, 3362t
Acetanilide, 784t
Acetazolamide
actions of, 2291
for acute angle-closure glaucoma, 221
adverse effects of, 340, 366–367, 410, 2281, 3619
for altitude illness, 3618, 3618t, 3620, 3621
for episodic ataxia, 3425
for heart failure, 1946t
for hyperkalemic periodic paralysis, 3530
for hypokalemic periodic paralysis, 3530
for metabolic alkalosis, 366
for paroxysmal symptoms in MS, 3474
for pseudotumor cerebri, 224
for raised CSF pressure headache, 116
for salicylate-induced acidosis, 362
for tumoral calcinosis, 3217
for uric acid nephropathy, 3252
Acetoacetate, 360
Acetylcholine (ACh), 288, 297, 3427
Acetylcholine receptor (AChR)
in congenital myasthenic syndromes, 3511–3512,
3512t
in myasthenia gravis, 2696t, 2735, 3509–3510, 3511
Acetylcholine receptor (AChR) antibodies, 729t
Acetylcholinesterase (AChE), 3511, 3512t
Acetylcholinesterase (AChE) inhibitors
for gastroparesis, 293, 294t
nerve agents as, S4
overdosage/poisoning with, 3592t
for snakebite treatment, 3599, 3601t
Acetyl-CoA, 3793
N-Acetylglutamate synthase deficiency, 3270t,
3273
N-Acetyltransferase, 467t
Achalasia, 2427
chronic, esophageal cancer and, 626
clinical features of, 2427
diagnosis of, 2427, 2427f
differential diagnosis of, 2427
dysphagia in, 289
LES relaxation impairment in, 2427, 2428f
subtypes of, 2428f
treatment of, 2396, 2397f, 2427–2428
Achilles bursitis, 2878
Achondrodysplasia, 3216, 3646
Achondroplasia, 3228
AChR. See Acetylcholine receptor (AChR)
Achromatopsia, 202, 218
Achromobacter xylosoxidans, 1248, 1248t
Acid anhydride exposure, 2171, 2171t
Acid-base disorders, 359, 359t, 360t, S1. See also
specific disorders
Acid-base homeostasis, 359
Acid-base nomogram, 359–360, 359f
Acidemia, 2659, 3268
Acid ethyl esters, 3142t
Acid-fast bacteria, S11
Acid fume exposure, 2171t
Acid maltase (acid α-glucosidase) deficiency. See
Pompe disease
Aciduria, orotic, 3253t, 3254
Acinetobacter spp., 1275
Acinetobacter spp. infections, 1275
antibiotic resistance in, 1135, 1168t, 1169, 1276,
1277–1278
bloodstream, 1277
in cancer patient, 558t, 559
clinical features of, 1276–1277
community-acquired, 1276
complications of, 1278
diagnosis of, 1275, S11
in disasters, 1276
epidemiology of, 1275–1276
etiology of, 1275
health care–associated, 1275–1276
infection control and prevention of, 1278–1279,
1278f
meningitis, 1277
pathogenesis of, 1276
pneumonia, 1276–1277
prognosis of, 1278
in returning war veterans, 1276, S6
skin and soft tissue, 1277
treatment of, 1156–1157t, 1277–1278, 1278t, S6
urinary tract, 1071, 1277
ventilator-associated pneumonia, 1017–1018,
1130
ACIP (Advisory Committee on Immunization
Practices), 982
Acitretin, 378, 378t, 384, 385t, 410
aCL (anticardiolipin), 2745, 2749t
Acneiform eruptions, 385–386, 387t
Acne rosacea, 382
clinical features of, 370t, 372f, 382, 382f, 386, A5
complications of, 383
differential diagnosis of, 385–386
treatment of, 383
Acne vulgaris, 381
clinical features of, 370t, 372f, 381–382, 382f,
395, A5
drugs exacerbating, 409
folliculitis in, 1035
pathophysiology of, 382
treatment of, 382
Acotiamide, 297
Acoustic neuroma. See Vestibular schwannoma
(acoustic neuroma)
Acoustic reflex, 245
Acoustic reflex decay, 245
Acral angiodermatitis, 398
Acral erythema, drug-induced, 410
Acrocephalopolysyndactyly (Pfeiffer’s syndrome),
3649
Acrochordon, 370t, 372f, 390
Acrocyanosis, 1815, 2113f, 2114
Acrodermatitis chronica atrophicans, 1428
Acrodermatitis enteropathica, 2532
Acrodysostosis, 3189–3190, 3189t
Acrolein exposure, 2171t
Acromegaly, 2912
clinical features of, 2912, 2913f, 3531
arthropathy, 2871
cutaneous, 390
hirsutism, 3039
hypertension, 2080
oral, 256–257
skeletal, A15
diagnosis of, 2912
etiology of, 2871, 2912, 2912t
familial, 2908
laboratory investigation of, 2904t, 2912
vs. pachydermoperiostosis, 3215–3216
paraneoplastic, 722t
treatment of, 2912–2914, 2914f
Acro-osteolysis, 2779, 2779f
Acropachy, thyroid, 2876, 2939f, 2940
Acroparesthesia, in Fabry disease, 3258
Acrylamide, 3495t
ActA, 1209
ACTA2 gene mutations, 3229t, A16
ACTH. See Adrenocorticotropic hormone (ACTH)
ACTHoma, 664t, 665
ACTH stimulation test, 2956
Actin, 1804, 1804f, 1957f, 2696t
Actinic cheilitis, 587, 587f
Actinic dermatitis, 422
Actinic keratosis
clinical features of, 371t, 372f, 587f, A5
conversion of, 587
malignant conversion of, 419
sun avoidance and, 491
treatment of, 418
Actinic prurigo, 421
Actinobacillus spp. See Aggregatibacter spp.
Actinomyces spp., 1340. See also Actinomycosis
Actinomyces-like organisms, 1342
Actinomycetoma, nocardial, 1338, 1338f, 1339,
1339t, 1340. See also Nocardia spp.
infections
Actinomycosis, 1340
clinical features of
abdominal, 1341–1342
CNS, 1113t, 1342
disseminated, 1342–1343
in dog-bite wound, 1124
hepatic-splenic, 1342, 1342f
musculoskeletal and soft tissue, 1342
oral-cervicofacial, 258t, 261, 1341, 1341f, 1354
pelvic, 1342, 1342f
thoracic, 1341, 1341f
diagnosis of, 1343, S11
epidemiology of, 1340
etiology of, 1340
pathogenesis of, 1341
treatment of, 1343–1344, 1343t
Action potentials, cardiac, 1806, 1866–1868, 1867f,
1869, 1874f
Action spectrum, 417
Activase. See Alteplase (rtPA)
Activated charcoal, 297, 3588, 3589, 3607
Activated partial thromboplastin time (aPTT)
causes of abnormal values, 456t
in coagulation disorders, 911, 911t, 912
coagulation factors tested in, 455, 455f, 911f
LA-PTT, 456
INDEX
for monitoring heparin therapy, 930 I-3
in preoperative testing, 456
prolonged, 456t
reagent composition of, 456
Active surveillance
in prostate cancer, 685–686
in testicular cancer, 691
Active transport, 2290
Activin, 2895
Acupressure, 294, 2386
Acupuncture, 126, 129, 3785t, 3787, 3788
Acustimulation, 2386
Acute brain failure. See Delirium
Acute cellular rejection, 1974, 2213
Acute chest syndrome, 760
Acute confusional state. See Delirium
Acute coronary syndromes
diagnosis of, 2053, 2053f
evaluation and management of, 2047f
global considerations in, 2052
hyperbaric oxygen therapy for, 3626t
myocardial infarction
non-ST-segment elevation. See Non-STsegment elevation acute coronary
syndrome (NSTE-ACS)
ST-segment elevation. See ST-segment
elevation myocardial infarction (STEMI)
PCI for, 2069. See also Percutaneous coronary
interventions (PCI)
pulmonary edema in, 2256
unstable angina, 100, 101t, 2046. See also NonST-segment elevation acute coronary
syndrome (NSTE-ACS)
venous thromboembolism and, 2093, 2094f
Acute disease- or injury-associated malnutrition,
2535
Acute disseminated encephalomyelitis (ADEM),
3476, A16
Acute febrile illness, 973
approach to the patient, 974
clinical presentations of, 974–980, 975t
diagnostic workup in, 974
history in, 974
physical examination in, 974
rashes associated with, A1
treatment of, 974, 975t
Acute febrile neutrophilic dermatosis. See Sweet
syndrome
Acute generalized eruptive/exanthematous
pustulosis (AGEP)
clinical features of, 138t, 386, 414, 414f, 416t, A1
differential diagnosis of, 143, 414
drugs associated with, 414, 416t
immune pathways of, 408t
Acute HIV syndrome, 1540, 1562, 1569f, 1569t.
See also HIV infection
Acute inflammatory demyelinating polyneuropathy
(AIDP), 3501, 3502t, 3504t
Acute intermittent porphyria (AIP), 3243
clinical features of, 3238t, 3243, 3487
diagnosis of, 3238t, 3243–3244
genetic considerations in, 3487
global considerations in, 3239
pathophysiology of, 3238f, 3487
treatment of, 3244
unsafe drugs in, 3243
Acute interstitial nephritis (AIN), 2357
allergic, 2281, 2281f, 2301, 2357–2358, 2358f
autoimmune, 2281, 2281f
clinical features of, 332t, 2303t, 2357–2358, A4
in crystal deposition disorders, 2359–2360
diagnosis of, 332t, 2303t
drug-related, 2281f, 2301, 2359
etiology of, 2281, 2281f, 2357t
granulomatous, 2359
hypokalemia in, 349
hypovolemia in, 340
idiopathic, 2359
IgG4-related, 2359, 2838
infection-associated, 2359
in light chain cast nephropathy, 2360, 2360f, A4
in lymphomatous infiltration of the kidney,
2360
in obstructive tubulopathies, 2359–2360
renal biopsy in, A4
in Sjögren’s syndrome, 2359
in SLE, 2359. See also Lupus nephritis
treatment of, 2358f, 2358t
in tubulointerstitial nephritis with uveitis, 2359,
2359f
Acute interstitial pneumonia (Hamman-Rich
syndrome), 2195
Acute kidney injury (AKI), 2296
approach to the patient, 333f, 334, 2279, 2279t
clinical features of, 332t, 341, 342, 348, 350, 2302,
2303t
complications of, 2305
diagnosis of
biomarkers, 2305
blood laboratory findings, 334t, 2301–2302,
2303t, 2304
history and physical examination, 2302
imaging, 2305
renal biopsy, 2305, A4
renal failure indices, 2304–2305
urine findings, 334t, 2302, 2303t, 2304f
epidemiology of, 2296
etiology and pathophysiology of
after liver transplantation, 2638
in critically ill patient, 2224
envenomation, 3599
hypokalemia, 350
intrinsic, 2297
ischemia-associated, 2298–2300
in leptospirosis, 1420
in malaria, 1725, 1731
nephrotoxin-associated, 2300–2301
postrenal, 2301
prerenal, 2296–2297
in sarcoidosis, 2832–2833
in scleroderma renal crisis, 2307, 2777, 2782,
2786, A4
sepsis-associated, 2297–2298
in systemic disease, 2284, 2285f
in transplant recipient, 2329
in uric acid nephropathy, 3251–3252
global considerations in, 2296
incidence of, 2296
intrinsic
approach to the patient, 335
diagnosis of, 2279t, 2303t
etiology of, 2303t
pathophysiology of, 2279t, 2284, 2297, 2297f,
2299f
treatment of, 2307
ischemia-associated, 335, 2298–2299, 2300f,
2303t
nephrotoxin-associated, 335, 2300–2301, 2303t
postrenal
approach to the patient, 334–335
diagnosis of, 2279t
pathophysiology of, 335, 2279t, 2284, 2297f,
2301, 2302f
treatment of, 2307
prerenal
approach to the patient, 334
clinical features of, 2303t
diagnosis of, 2279t, 2284, 2296–2297, 2297f,
2303t
pathophysiology of, 2279t
treatment of, 2306
prevention of, 2306–2307
prognosis of, 2308
sepsis-associated, 2245, 2297–2298, 2303t
staging of, 2296, 2296t
treatment of, 2306, 2307t
Acute lung injury (ALI), 2226, 2227f, 2228. See
also Acute respiratory distress syndrome
(ARDS)
Acute lymphoid leukemia (ALL), 828
B-cell lineage, 829, 830t, 832t, 3686t, 3689
in congenital disorders, 828
cytogenetic and molecular analysis in, 829–830
diagnosis of, 828–829, 829t
epidemiology of, 828
etiology of, 828
genetic considerations in, 500t
hyperleukocytosis in, 571
immunological subtypes of, 829, 830t
infections in, 556t, 557, 558f, 558t, 560, 561
lymphadenopathy in, 458
minimal residual disease in, 830, 830t
morphological subtypes of, 829
peripheral blood smear in, 828–829, 829t, A6
Ph-like, 829–830
prevention of, 768
prognosis of, 830
T-cell lineage, 829, 830t, 832t
treatment of
in adolescents and young adults, 832, 832t
in adults, 832, 832t
algorithm for, 831f
in central nervous system disease, 832
gene therapy, 3686t, 3689
HCT, 832, 901, 902t
maintenance therapy, 831
in older adults, 832, 832t
principles for, 831–832
targeted therapies, 832–833, 833t
Acute megakaryoblastic leukemia, 862
Acute mesenteric ischemia. See Intestinal ischemia
Acute motor axonal neuropathy (AMAN), 3501,
3502t, 3503f, 3504t
Acute motor sensory axonal neuropathy (AMSAN),
3501, 3502t, 3503f, 3504t
Acute mountain sickness (AMS), 3617–3619, 3618t
Acute myeloid leukemia (AML), 809. See also
Acute promyelocytic leukemia (APL)
cancer stem cells in, 521
classification of, 809t, 810–811, 810t
clinical features of, 812–814
diagnosis of, 813–814, 814t
etiology of, 809–810
genetic considerations in, 500t, 809t, 810–811,
810t, 811t, 3794
hyperleukocytosis in, 571
immunophenotypic findings in, 811
incidence of, 809
infections in, 556t, 558t, 560, 817
monocytopenia in, 448
with mutated CEBPA, 811
with mutated NPM1, 811
with mutated nucleophosmin, 810
myelodysplasia and, 799
peripheral blood smear in, 813, 813f, A6
prognosis of, 811–812, 812t
INDEX
I-4 Acute myeloid leukemia (AML) (Cont.):
as second malignancy in cancer survivors, 694,
740, 810
skin manifestations of, 399
treatment of, 814
algorithm for, 815f
HCT, 816–817, 901, 902t
induction chemotherapy, 814–815
investigational agents, 816t
postremission therapy, 815–817
in relapsed or refractory disease, 817–818
supportive care, 817
Acute myelomonocytic leukemia, 257, 259t
Acute myocardial infarction (AMI). See Myocardial
infarction (MI)
Acute necrotic collection, pancreatic, 2660t
Acute necrotizing myopathy, 728t, 734, 2276
Acute nephritic syndromes, 2334, 2335t, 2336
ANCA small vessel vasculitis, 2335t, 2340.
See also Eosinophilic granulomatosis
with polyangiitis; Granulomatosis with
polyangiitis; Microscopic polyangiitis
antiglomerular basement membrane disease,
271, 2332, 2335t, 2338–2339, A4
cryoglobulinemia. See Cryoglobulinemia
endocarditis-associated glomerulonephritis,
2335t, 2337
Goodpasture’s syndrome. See Goodpasture’s
syndrome
IgA nephropathy. See IgA nephropathy
IgA vasculitis. See IgA vasculitis
lupus nephritis. See Lupus nephritis
membranoproliferative glomerulonephritis.
See Membranoproliferative
glomerulonephritis
poststreptococcal glomerulonephritis. See
Poststreptococcal glomerulonephritis
renal biopsy in, A4
Acute pancreatitis, 2658
in alcohol use disorder, 2658, 3559
approach to the patient, 2652–2653, 2659
clinical features of, 2661
abdominal pain, 111, 111t, 2659
AKI, 2300
fat necrosis, 397
hypocalcemia, 3185
hypovolemia, 341
nausea and vomiting, 292
complications of, 2663–2664, 2664t
diagnosis of, 2659
CT, 2660t, 2662f
endoscopy, 2419
ERCP, 2662f
imaging methods, 2653, 2653f, 2654t,
2655–2656, 2661
laboratory tests, 2653–2655, 2654t, 2660–2661
differential diagnosis of, 2660
drug-related, 2659
epidemiology of, 2652–2653
etiology of, 2658–2659, 2658t
gallstone, 2410
genetic considerations in, 2659
in HIV infection, 1571, 2664
incidence of, 2658
interstitial, 2659, 2660t, 2661
morphologic features of, 2660t
necrotizing. See Necrotizing pancreatitis
pancreatic enzyme activation in, 2659
pathogenesis of, 2659
phases of, 2661, 2662f
physical examination in, 2659
recurrent, 2664
severity assessment in, 2661, 2661t, 2663
treatment of, 2661–2663
Acute pharyngeal cervicobrachial neuropathy,
3504t
Acute promyelocytic leukemia (APL)
chromosome abnormalities in, 516, 810, 810t,
3645t
clinical features of, 813
peripheral blood smear in, A6
treatment of, 513t, 517, 551t, 553, 818, 2889
Acute quadriplegic neuropathy, 3531, 3531t
Acute radiation syndrome, S5
Acute renal failure. See Acute kidney injury (AKI)
Acute respiratory disease (ARD), 1507
Acute respiratory distress syndrome (ARDS),
2225
in blastomycosis, 1666
classification of, 2244–2245
clinical course of, 2225–2227, 2226f
in COVID-19 disease, 2220
diagnosis of, 2226f, 2226t, 2227f, A12
disorders associated with, 2225, 2225t
etiology of, 2225, 2225t
functional recovery after, 2229
HSV infection and, 1475
incidence of, 2225
pathophysiology of, 2225–2227, 2227f
pressure-volume curves in, 2230, 2230f
prognosis of, 2228–2229
respiratory failure in, 2220–2221, 2221f
in sepsis/septic shock, 2244–2245
treatment of, 2227–2228, 2229f, 2229t. See also
Mechanical ventilation
Acute rheumatic fever. See Rheumatic fever
Acute tubular necrosis (ATN). See Acute kidney
injury (AKI)
AC (assist control) ventilation, 2231, 2231t, 2232f.
See also Mechanical ventilation
Acyclovir
actions of, 1097, 1460
adverse effects of
gastrointestinal, 1098
hematologic, 1098
musculoskeletal, 2847t
neurologic, 1098, 1460
renal, 1460, 1477, 2301
for Bell’s palsy, 3441
for CMV infection prophylaxis, 1490
global considerations in, 1478
for herpes zoster, 1039t, 1461, 1461t, 1482,
3452
for HSV infections
actions of, 1477
encephalitis, 974, 1461t, 1474, 1477,
1478t
esophagitis, 1478t, 2432
genital, 1039t, 1461, 1461t, 1477, 1478t
mucocutaneous, 1461, 1477, 1478t, 1513
in neonates, 1476, 1478t
in transplant recipient, 1143, 2330
for HSV prophylaxis
in HIV infection, 1565t
in transplant recipient, 901, 901t, 1138, 1142t,
1144
for oral hairy leukoplakia, 1486–1487
pharmacology of, 1460
resistance to, 1098, 1460, 1477, 1478t
for varicella treatment, 1460, 1461t, 1482
for viral encephalitis, 1097
for viral meningitis, 1104, 1108
for viral myelitis, 3452
for VZV prophylaxis, 1564t
AD. See Alzheimer’s disease (AD)
Adalimumab
actions of, 2707t
adverse effects of, 379t, 448, 2485, 2487t, 2489,
2762t, 2794
for autoimmune and inflammatory diseases,
2701, 2707t
for axial spondyloarthritis, 2794
for chronic uveitis, 221, 2796
for IBD, 2485, 2487t
for IBD-associated arthritis, 2802
monitoring during treatment with, 2487t, 2762t
for psoriasis/psoriatic arthritis, 379t, 2800
for rheumatoid arthritis, 2761, 2762t
for sarcoidosis, 2837
Adamantinoma, 714
ADAMTS2 gene mutations, 3225t
ADAMTS13, 907, 2348, 2365
Adaptive immune system, 2672, 2689. See also
Immune response/immune system
cells triggering, 2679t
definition of, 2671
immunoglobulins in. See Immunoglobulin(s)
innate immune system and, 2672
intercellular interactions of, 2680f
primary immunodeficiencies of
B lymphocyte deficiencies. See B cell(s),
deficiencies of
T lymphocyte deficiencies. See T cell(s),
deficiencies of
response to microbes, 2694, 2697–2698
response to viruses, 1457, 1458f
T cells in. See T cell(s)
Adaptive myelination, 3293
Adaptive servoventilation, 2209
ADCC (antibody-dependent cell-mediated
cytotoxicity), 1557, 1557f, 1558, 2671,
2676
ADCY5 gene mutations, 3406
Addison’s disease. See also Adrenal insufficiency
anemia in, 753
APS-1 and, 2993, 2994t
APS-2 and, 2994, 2994t, 2995t
autoantibodies in, 2696t, 2994
clinical features of, 2971, 2973f
diarrhea, 303
hyperkalemia, 353
oral manifestations, 260t, A15
skin manifestations, 390, 391, A15
genetic considerations in, 2994–2995
hypoglycemia in, 3133
inflammasome mutations in, 2677t
thymic tumors in, 2996
Adefovir
actions of, 1466
adverse effects of, 1466, 1571, 2597,
2601
for chronic HBV infection, 1465t, 1466, 2595t,
2596–2597, 2599f, 2601, 2601t
for HBV prophylaxis in transplant recipient,
1145
in pregnancy, 2602
resistance to, 2601t
A-delta (Aδ) fibers, 91, 92
ADEM (acute disseminated encephalomyelitis),
3476, A16
Adenine, 3641
Adenine nucleotide translator (ANT), 2696t
Adenine phosphoribosyltransferase (APRT)
deficiency, 3251t, 3253
Adeno-associated virus (AAV), 644, 3415, 3685t,
3688
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